Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1109 212 8e-50 seq1432 96.9 4e-15 >seq1109 Length=147467 Score = 212 bits (234), Expect = 8e-50 Identities = 900/1398 (64%), Gaps = 39/1398 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | ||||| || || ||||| || || |||||||| || ||| || Sbjct 96143 GTAAATGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGA 96202 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| ||| || |||||||||||| | || || | Sbjct 96203 AGCAGTGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGC 96262 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 |||||| | ||||||| || | | || | || ||||||||||| |||||| Sbjct 96263 CTTGAGCGAAGCCCAGTCCCAGAGGTCGGAGGGAGTGACGC-CCCACATGTCATACTGAA 96321 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || ||||| ||||| ||||| | | || || |||| || || | | ||||| Sbjct 96322 GTTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAGCCA 96381 Query 110946 ATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | || || | |||| || || | |||||||| ||||| || ||||| | | |||| Sbjct 96382 ACTCGCACGATCGC-TCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAA 96440 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 || ||| || || || || || | | || ||| |||| |||||||| Sbjct 96441 CGACGCGCCTCAGGGGACTCGAAGGCATAACCCATGATCATGAATGCATCGGCGAGACCC 96500 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 111124 |||||||| | ||| || || | ||| ||||| || || || || |||||||| Sbjct 96501 TGAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGG 96560 Query 111125 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACA-AT--CTTTGT-GATTTC 111180 || | || |||| |||| ||| | || ||| || || ||||| || || Sbjct 96561 TAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTG----CAGATGGCTTTGGCGACCTC 96616 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 ||| || | |||| | || | | || | | || |||||||| Sbjct 96617 ATGCAGACGCTTGAAATCGTAGACCTTGGTAACAGGGTCGATGAAGGTGGGGAGGGCGAT 96676 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || ||||| ||||| ||||| |||||| | | |||||| | ||||| || || Sbjct 96677 GGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCA 96736 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT-GCACGCAT 111359 | |||||| | ||| || || || | ||||| ||||| ||| ||| ||| || | Sbjct 96737 GAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGT 96795 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-A 111418 |||||||||| ||| | || | || ||||| ||||| || | ||| || || | ||| | Sbjct 96796 CCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGA 96855 Query 111419 ACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGG 111478 | || | | || | || | || |||||||| |||||||| |||||| Sbjct 96856 GCTTCTGGGCCTTG-ACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTAGAGA 96914 Query 111479 GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGA 111538 |||||||| ||||| ||||| || || || || || || || | || Sbjct 96915 CGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAGC 96974 Query 111539 GACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 111598 ||||| | ||| | ||| |||| ||||||||| || || || | ||| || | | Sbjct 96975 GACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAG 97034 Query 111599 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 111658 ||||| || | ||| | || || | ||| ||||| || || || |||||||| Sbjct 97035 AAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCG 97094 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------ 111712 | || ||||| |||||| ||||||| |||| || | | || ||||| Sbjct 97095 AAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTTGTTA 97151 Query 111713 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 111772 ||| |||| | || || || || ||| ||| || || || ||||| || | ||||| Sbjct 97152 CCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCG 97211 Query 111773 T--CTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC--AT-CA-TGG 111826 | |||| ||| || || || ||| || | | | ||| || || ||| Sbjct 97212 TTGCTGA--CACCGTTGGTACCGGCAATGTAAG----AGCCGGTACCACGAATGCAGTGG 97265 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 |||| | || ||||| || || ||| ||||| ||||| | | || || | Sbjct 97266 ATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCG 97325 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 ||||| |||| ||| ||||| ||||| ||| || |||||| || || | ||| || Sbjct 97326 TAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGG 97385 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACAT 112005 || ||||| || |||||||| ||||| | || ||| | || ||| ||| ||||| Sbjct 97386 TGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGT-AAAGTACTTTTGCGACAT 97444 Query 112006 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCG 112065 || ||| ||||| | || |||||||| | ||||| || |||| ||||| || Sbjct 97445 GAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACG 97504 Query 112066 CATGAACATGTACTGTGG 112083 ||||| ||||| ||| || Sbjct 97505 CATGATCATGTGCTGGGG 97522 >seq1432 Length=176812 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| |||||||| || || || || || || || |||||| ||||| Sbjct 172890 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACC 172831 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | || || || ||||||||||| Sbjct 172830 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 172771 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||| || || ||||| |||| || || || ||||||| Sbjct 172770 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 172730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012012881600