Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1109 224 1e-53 seq1432 138 1e-27 seq1240 134 2e-26 >seq1109 Length=147467 Score = 224 bits (248), Expect = 1e-53 Identities = 1117/1756 (64%), Gaps = 67/1756 (4%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||||||||| | ||||||||||| |||| ||||||| | || | ||||| |||| Sbjct 95799 CGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGAGGTG 95858 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | || || || ||| || | || || | || || || ||||| Sbjct 95859 AGCTGACCGAACGTAGGAGCGGACAGGTGGATATTGAGCGACTGCGACTGGCAAATGAAA 95918 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 || ||||| || ||||| || || | ||||| | ||| ||||| |||||| || Sbjct 95919 GCACCTCGATCGGCGGCCATGTCGATGATGGCCTTCTGCGAGATCTCCCAGACAGTCTTG 95978 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTG 118076 ||||| ||||| ||| || |||||| | || ||||||||||| || | | || Sbjct 95979 TAGAGCTTCTTGATACGGTCGGGGATACCGGGGACGTTTTGGATGGAGCC----GGCGTG 96034 Query 118077 ACC-ATGA---GATCCTTCATA---TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 118129 | | |||| | | ||||| || || ||| || | ||| || || ||| Sbjct 96035 AGCGATGATTCGGTTTTTCATTGTGTCGTT---CCAAAGTC---TCTGTTCGACCAACTC 96088 Query 118130 CACGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGA 118185 ||| | ||||| || || ||||| || || || | ||| || | Sbjct 96089 GCGGAGCAACCAGGGGTTGACGACCTGGAATTCACCAGCAAGTACACGACG-AGAGTAAA 96147 Query 118186 TATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTG 118245 | || | ||||| ||||| |||||||| ||| |||||||| || || || || | Sbjct 96148 TGTTCGAAGTGTAGGGCTCGAAGCACTCGTTGAAGCCCAAGATCTGACTGGTCGAAGCAG 96207 Query 118246 TGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGA 118305 ||||||||||||||| | || |||||| ||||| | | ||| |||||| Sbjct 96208 TGGGCATGGGTGCCAACAAGAGTGAGTTACGAAGACCGTGCTTGGCAATCTTAGCCTTGA 96267 Query 118306 G---AGC---GTCCCAG---TCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACT 118356 | ||| ||||||| ||| || ||| || | |||| |||| ||| ||| Sbjct 96268 GCGAAGCCCAGTCCCAGAGGTCGGAGG-GAG---TGACGCCCC-----ACATGTCATACT 96318 Query 118357 GGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416 | || || ||||| || ||||| || | ||||||| || | ||| | ||| | Sbjct 96319 GAAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTAGGTGCCGTGCTCCTGAG 96378 Query 118417 CCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 |||| ||| | | |||| ||||| || |||||||| || || || || || | | ||| Sbjct 96379 CCAACTCGCACGATCGC-TCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTC 96437 Query 118476 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 118535 | ||||| ||| || || || | | || ||| |||| |||||| Sbjct 96438 AAACGACGCGCCTCAGGGGACTCGAAGGCATAACCCATGATCATGAATGCATCGGCGAGA 96497 Query 118536 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG 118595 || || ||||||| || || || || || | ||| || || ||||| || ||| Sbjct 96498 CCCTGAACACCGATACCGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACG 96557 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || || | || | ||||| | | | || | || ||| || | || | || ||| Sbjct 96558 GGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATGGCTTTGGCGACCTCA 96617 Query 118656 TGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 118714 || || | | |||| | || | || | | || | | || |||||||| Sbjct 96618 TGCAGACGCTTGAAATCGTAGACCTTG-GTAACAGGGTCGATGAAGGTGGGGAGGGCGAT 96676 Query 118715 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCA 118774 || |||| || || |||| | |||||| ||| |||||| || ||||| ||||| Sbjct 96677 GGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCA 96736 Query 118775 CAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 118834 | ||| || | ||| ||||| || | |||||| || || ||||| |||| || || Sbjct 96737 GAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCAGCGTC 96796 Query 118835 CTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 |||||| || ||| | || | || ||||| || || |||| ||| || || | ||||| Sbjct 96797 CTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGA- 96855 Query 118895 ATCGGCAGCTGGCACAGTGGCG-TTGGCT-----CGCCCCTCTTCCTCGTACTTTGTGTA 118948 || |||| | || || || ||| || ||||| ||||||| ||| Sbjct 96856 ----GCTTCTGGGCCT-TGACGGTTCGCTTACAGCGTCCCTCAGCCTCGTAGCGCTCGTA 96910 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 ||| |||||||| ||||| | || | || || || || | ||||| | Sbjct 96911 GAGACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACAT 96970 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||| ||||| | ||| || ||| |||| |||||||||||| || |||| ||| || || Sbjct 96971 GAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGC 97030 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 ||||||| || || ||| |||| || | || || || ||||| || | || Sbjct 97031 GTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAA 97090 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG--- 119185 || | || ||||| |||||| || || | ||| | || | | || | |||| Sbjct 97091 CTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACC---AGGACGCTT 97147 Query 119186 ---ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 |||| | |||| || || | |||||| ||| || ||||| ||||| || | ||| Sbjct 97148 GTTACCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGAT 97207 Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 ||| | | || || || || ||| ||| | | | | |||||| Sbjct 97208 ACCGTTGCTGACACCGTTGGTACCGGCAATGTAAGAGCCGGTACCACGAATGCAGTGGAT 97267 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 || | ||| ||||| || || ||| ||||| || || | |||| || |||| Sbjct 97268 GTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTA 97327 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 |||||| |||||||||||| |||| | | || ||||| || ||| | ||||| Sbjct 97328 GATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTG 97387 Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCT 119481 ||| ||||| ||||||||||| ||||| | || | || || ||| ||| ||||| Sbjct 97388 GGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCAT-GAGTAAAGTACTTTTGCGACATGA 97446 Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541 || ||| ||||| | | |||||| | ||||||||||||| | ||| |||| Sbjct 97447 GGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACACGCA 97506 Query 119542 TAAACATGTATTGGGG 119557 | | ||||| ||||| Sbjct 97507 TGATCATGTGCTGGGG 97522 >seq1432 Length=176812 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| |||||||||||||| |||||||| || || |||||| ||||| Sbjct 172890 GGCAAAATCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGACC 172831 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| |||| ||| ||||| ||||||||||| Sbjct 172830 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCAAAGGAGCCTGAGAAGAAGAT 172771 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || || || || || |||| |||||||||||| |||| Sbjct 172770 ACCTTCGACGGCGGCAAAGGCAACGAGACGCTCAGCGAAGG 172730 >seq1240 Length=316128 Score = 134 bits (148), Expect = 2e-26 Identities = 261/380 (69%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 179733 CTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 179792 |||||| ||||| || |||||| || || | |||| |||||||||||| ||||| || Sbjct 142870 CTTGAGCAGCGAGGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATGTGCGA 142811 Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 179851 |||||||| |||| ||| ||||| ||||| | | || || || ||||| | || | Sbjct 142810 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTGACGT 142752 Query 179852 CTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 179911 | | || | ||| || || || ||||| | ||||| ||||| | |||| ||| | Sbjct 142751 CGAGGTACTGCTTGCCGTGCTGCAGACCGATGATCTCCTTGATCGCTTTGATCTCGGCAT 142692 Query 179912 TTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGA 179971 | ||| || | | || || |||||||| | ||| ||||| || |||| Sbjct 142691 TCTTCATGATCTGATCGTGAGTCGCTTCACGGACATTGAGAAGCTTACCACGAAGCGGGA 142632 Query 179972 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 180031 | |||||||| | |||||||| ||| | |||||||| || || || | ||| |||| Sbjct 142631 AAACACCGTAATTGTCACGACCCACCTCGACAAGACCAGCCACAGCAAGCGCCTTGGCGG 142572 Query 180032 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCTGCCTTGTTC 180090 | ||||| || || | |||||| || || | | | | | | | | || || ||||| Sbjct 142571 AGTCACCTTCGGTGAGGATGAGAGTGCA-GTCCTTGGCTTTCCTGCCACCAGCGTTGTTG 142513 Query 180091 GCGTCGTCCAACTTGGGAAT 180110 || || || | ||||||||| Sbjct 142512 GCATCTTCAAGCTTGGGAAT 142493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415518299760