Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1109 315 8e-81 seq1432 145 9e-30 seq1240 140 4e-28 seq1379 86.0 7e-12 >seq1109 Length=147467 Score = 315 bits (348), Expect = 8e-81 Identities = 921/1396 (66%), Gaps = 37/1396 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||||||||| || | |||||||| || Sbjct 97522 CCCCAGCACATGATCATGCGTGTCGCTGTCGGTATTCACGGCCAGGACATTGAGAGTGCT 97463 Query 104282 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||| ||| ||| || | ||| || | ||||| ||||| Sbjct 97462 ATTGAGACGTACAACCTCATGTCGCAAAAGTACTTT-ACTCATGCCTCGCCAACGCTCTT 97404 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || ||||| || || || | || || |||||| || ||| ||||| || Sbjct 97403 CAACGCCGGTACCCCCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGA 97344 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| |||| ||||| | || || | | ||||| ||||| ||| || || Sbjct 97343 CTCGATCGACGGGATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 97284 Query 104461 GGGTATTGGGATGCACATCCA-TG-AT--GTGAGAGCCAATAAATCTCGTATTCGGGGGA 104516 ||||| || | ||||||| || || ||| | | | || ||| || | Sbjct 97283 TGGTATCGGTCTCAACATCCACTGCATTCGTGGTACCGGCT----CTTACATTGCCGGTA 97228 Query 104517 CAAATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 | || ||| |||| | ||||| | || ||||| || || || ||| ||| || || Sbjct 97227 CCAACGGTG--TCAGCAACGGTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCG 97170 Query 104575 CTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCC 104628 || || | |||| ||| ||||| || | | || |||| ||||||| Sbjct 97169 TTACGTCGACCAAGGTGGTAACAAGCGTCCT---GGTGCCTTTGCTATCTACATTGAGCC 97113 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGC 104688 |||||| ||||| || | |||||||| || ||||| ||||| ||| | ||||| | Sbjct 97112 TTGGCACTCGGATGTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGT 97053 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 || ||| || ||||||| |||||| ||| | || ||||||||||||||||| || || Sbjct 97052 TCGTGCCCGTGAGCTCTTCTACGCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGA 96993 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 | ||| |||| ||||||| ||| | || || || || || || || |||| | Sbjct 96992 GCAGAATGGCGATTGGTCGCTCATGTGCCCTAACGAGTGCCCCGGCCTTGCCGACTGCTA 96933 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-A 104867 ||||| |||||||| || ||| ||||||| || || | | | ||| | Sbjct 96932 CGGTGACGAGTTTGAGCGTCTCTACGAGCGCTACGAGGCTGAGGGAC-GCTGTAAGCGAA 96874 Query 104868 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || | || | || | | ||| | || || ||| ||||||| |||||||| |||| Sbjct 96873 CCGT-CAAGGCCCAGAAGCTCTGGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAAT 96815 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | ||| || ||||| ||||| ||||| ||| || || ||||| | ||| Sbjct 96814 CCTTTCATCCTCTACAAGGACGCTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACC 96755 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 |||||| | ||||| ||||| || |||||| | || | | | | |||||| ||| Sbjct 96754 ATCAAGTGCTCCAACCTCTGCACCGAAATCATCGAGTACTCTGCCCCCGATGAGGTCGCT 96695 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 105106 || || ||| | || || ||||| ||||||| | | || || | || ||| | Sbjct 96694 GTCTGCAACTTGGCCTCCATCGCCCTCCCCACCTTCATCGACCCTGTTACCAAGGTCTAC 96635 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 |||| | || || || || | ||| | || ||| ||| | |||| | || Sbjct 96634 GATTTCAAGCGTCTGCATGAGGTCGCCAAAGCCATCTGCAAGAACTTGAACAAGATCATC 96575 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 || | || | ||||||||||| |||||| ||| || ||| | |||||||| || Sbjct 96574 GACATCAACTACTACCCCGTTGAAGAAGCTCGTCGATCCAACATGCGTCACCGTCCCATC 96515 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATT 105284 ||| ||||||||||||||||||| |||| |||||| || | | | | || || || | Sbjct 96514 GGTATCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCATGG--GTTATGCCTTCGAGT 96457 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 || || ||| | || | || || || |||||||| |||||||||||||| | Sbjct 96456 CCCCTGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGACCATCTATCACGCCGCTCTCG 96397 Query 105345 AGGCGA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 | |||| || | |||||||| ||| | || | || || || | | ||||| || Sbjct 96396 A-GCGATCGTGC-GAGTTGGCTCAGGAGCACGGCACCTACGAGACATACCAAGGTTCGCC 96339 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACG 105461 ||||| || || | ||||| | ||| ||||||| || | || | | || | Sbjct 96338 CGCTTCCCAGGGAGAACTTCAGTATGACATGTGGG-GCGTCACTCCCTCCGACCTCTGGG 96280 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 |||||| | ||||||| || || | |||||||||||| ||| | ||| Sbjct 96279 ACTGGGCTTCGCTCAAGGCTAAGATTGCCAAGCACGGTCTTCGTAACTCACTCTTGTTGG 96220 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || ||||| || || || ||| || |||||||| || || ||||| || |||| Sbjct 96219 CACCCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCTTCAACGAGTGCTTCGAGCCCT 96160 Query 105582 ACACGACGAACATCTA 105597 |||| ||||||| || Sbjct 96159 ACACTTCGAACATTTA 96144 >seq1432 Length=176812 Score = 145 bits (160), Expect = 9e-30 Identities = 128/160 (80%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| |||||||| ||| | || ||||| || || |||||||||||||| || |||| Sbjct 172730 CCTTCGCTGAGCGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCT 172789 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 | | | || | |||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 172790 TTGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACG 172849 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| ||||||||||||||||| || ||| || ||||| Sbjct 172850 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGATTTTGC 172889 >seq1240 Length=316128 Score = 140 bits (154), Expect = 4e-28 Identities = 242/347 (70%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| ||||||||||||||||| ||||| |||| ||| ||| ||||||||||||| | Sbjct 142836 TTGATGATGAGACCCTTGATGTGCGAACCATCGTGATCCTGATCGGTCATGATCATGATA 142777 Query 169220 CGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGAT 169278 | || || || ||||| | || || | || | ||| || || || ||||| | ||| Sbjct 142776 CTGCCGTATCGCAAGCT-GCTGACGTCGAGGTACTGCTTGCCGTGCTGCAGACCGATGAT 142718 Query 169279 CTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAAC 169338 || ||||| | |||| ||| || ||| ||| | || || || || || Sbjct 142717 CTCCTTGATCGCTTTGATCTCGGCATTCTTCATGATCTGATCGTGAGTCGCTTCACGGAC 142658 Query 169339 ATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAG 169398 ||| | ||| |||||||| ||||| |||||||| | |||||||| || || || Sbjct 142657 ATTGAGAAGCTTACCACGAAGCGGGAAAACACCGTAATTGTCACGACCCACCTCGACAAG 142598 Query 169399 ACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATT--TT 169456 ||| || || || || | ||| || |||||||| ||||||| |||||| || || | || Sbjct 142597 ACCAGCCACAGCAAGCGCCTTGGCGGAGTCACCTTCGGTGAGGATGAGAGTGCAGTCCTT 142538 Query 169457 CCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAAT 169503 | |||| ||| || ||||| ||||| || | |||||||| Sbjct 142537 GGCTTTCCTGCC--ACCAGCGTTGTTGGCATCTTCAAGCTTGGGAAT 142493 >seq1379 Length=397549 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/228 (69%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGCGACTTCAAAG 9760 ||||| |||||||||||||||| |||||| || || || | | ||| |||| Sbjct 128524 GCATCGATCTCATCAATGAAGATGATGCAAGGAGCGTGCTTCTTG---GCGTTGGCAAAC 128580 Query 9761 AGATCCCGTACACG-CTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 | || || ||||| ||||| || ||||| || |||||||| ||||| | | | || Sbjct 128581 ATGTCTCGGACACGGCTTGGA-CCGACACCGACGAACATCTCTACAAACTCGGACCCAGA 128639 Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 | | ||| || ||| || ||||| ||| | || ||| || | |||||||| Sbjct 128640 AACGGACAAGAATGGCACACCAGCCTCACCGGCAGTAGCCTTGGCTAGCAAGGTCTTACC 128699 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||| || ||| | ||| | |||||| || |||||||||||||| Sbjct 128700 GGTACCGGGAGGACCGGAGAGAATGGCACCACGAGGAATCTTGGCGCC 128747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242237725040