Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq998 174 5e-38 seq1042 98.7 3e-15 seq2517 95.1 4e-14 >seq998 Length=480981 Score = 174 bits (192), Expect = 5e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| |||||||| || ||||| || ||||| || ||||| Sbjct 89116 CATACCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATC 89057 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || ||||| ||||| ||||| ||||||||||| Sbjct 89056 CGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGG 88997 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| || ||||| || ||||| || ||||| ||||| | || || || || Sbjct 88996 GGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTC 88937 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || ||||| |||||||| Sbjct 88936 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 88886 Score = 150 bits (166), Expect = 5e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || |||||||| | ||| ||||| || || || || || || || Sbjct 89341 ACCACCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 89282 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||||||||| || || ||||||||||| ||||| ||||||||||| || Sbjct 89281 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGG 89222 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || |||||||| || || || || || || || | ||||| | || || Sbjct 89221 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGAC 89162 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| ||||| | || || || || |||||||| Sbjct 89161 CTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 89114 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || ||||| |||||||| || || || || || || | Sbjct 167660 ACCACCACGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAA 167719 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| || || || ||||||||||| ||||| ||||||||||| || Sbjct 167720 AAGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGG 167779 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| || ||||| || || || || || || || || | || || | || || Sbjct 167780 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 167839 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || ||||| ||||| |||||||| Sbjct 167840 CTCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 167887 >seq1042 Length=313568 Score = 98.7 bits (108), Expect = 3e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| ||||| || ||||| || || || | || || Sbjct 114705 ATACCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCC 114646 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || ||||||||||| ||||| ||||| || || Sbjct 114645 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGG 114586 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || || || || || || || | || || | || Sbjct 114585 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCC 114526 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || ||||| || | ||||| || ||| Sbjct 114525 ACCTCAAGGGTGATGGTCTTACCTGTT 114499 >seq2517 Length=173 Score = 95.1 bits (104), Expect = 4e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 140546 CTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| || ||||| || || || || | || || || || || ||||| || |||||||| Sbjct 162 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAA 103 Query 140606 GATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATT 140665 ||| | || ||||| ||||||||||| ||||| || ||||| || || || || ||||| Sbjct 102 GATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATT 43 Query 140666 ATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTT 140707 || || | || || | || ||||| || || | ||||| Sbjct 42 GTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515204971454438