Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1109 331 1e-85 seq1240 89.7 6e-13 >seq1109 Length=147467 Score = 331 bits (366), Expect = 1e-85 Identities = 536/763 (70%), Gaps = 6/763 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | ||||| ||||| | ||| | ||| |||||||||| Sbjct 97509 TCATGCGTGTCGCTGTCGGTATTCACGGCCAGGACATTGAGAGTGCTATTGAGACGTACA 97450 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| |||||||||||||| || ||| ||||||| || |||||||| ||||| Sbjct 97449 ACCTCATGTCGCAAAAGTACTTTACTCATGCCTCGCCAACGCTCTTCAACGCCGGTACCC 97390 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||||||| | ||| || ||||| || | ||||||||||||||||||||||| | Sbjct 97389 CCCACCCTCAGCTCTCGTCGTGTTTCCTTGTCACCATGAAGGATGACTCGATCGACGGGA 97330 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| |||||| ||||||||| | |||||||||||| || Sbjct 97329 TCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGTGGTATCGGTCTCA 97270 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | | | |||| | |||| | || || || ||||| ||| | | | Sbjct 97269 ACATCCACTGCATTCGTGGTACCGGCTCTTACATTGCCGGTACCAACGGTGTCAGCAACG 97210 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | |||||||| |||||||| |||||||||||||| || || |||||| |||| |||||| Sbjct 97209 GTATCGTGCCCATGCTCCGTGTCTTCAACAACACTGCTCGTTACGTCGACCAAGGTGGTA 97150 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || || |||||| | ||||| |||||| | || | | |||| Sbjct 97149 ACAAGCGTCCTGGTGCCTTTGCTATCTACATTGAGCCTTGGCACTCGGATGTCTTCGAGT 97090 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | ||||| |||| ||| || ||| | || || | || |||||| || || ||| Sbjct 97089 TCCTCGACTTGCGCAAGAACCACGGTAAGGAGGAAGTTCGTGCCCGTGAGCTCTTCTAC- 97031 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 ||||| ||| | || || ||||||||| | | ||| ||| || | | || |||| || Sbjct 97030 GCTCTTTGGGTCCCCGATCTCTTCATGAAGAGGGTCGAGCAGAATGGCGATTGGTCGCTC 96971 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| |||||||||||||||| | | | || ||||||||| |||||| | | Sbjct 96970 ATGTGCCCTAACGAGTGCCCCGGCCTTGCCGACTG-CTACGGTGACGAGTTTGAGCGTCT 96912 Query 53791 GTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 || || || |||| | | |||| |||| ||| | |||||||| | || | | Sbjct 96911 CTA-CGAGCGCTACGAGGCTGAGGGACGCTGTAAGCGAACCGTCAAGGCCCAGAAGCTCT 96853 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || |||||| || ||| ||||| || | || | ||| ||||||||| Sbjct 96852 GGTACGCCATCCTCGAGTCTCAGACCGAGACCGGTAATCCTTTCATCCTCTACAAGGACG 96793 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 | | ||| ||| ||||||||||||| |||| |||||| Sbjct 96792 CTGCTAACCGCAAGTCCAACCAGAAGAACCTCGGTACCATCAA 96750 Score = 120 bits (132), Expect = 3e-22 Identities = 530/816 (65%), Gaps = 46/816 (6%) Strand=Plus/Minus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAA 55197 |||| ||||| | ||||||||| || |||||||| ||||| || || ||||| Sbjct 96593 GAACTTGAACAAGATCATCGACATCAACTACTACCCCGTTGAAGAAGCTCGTCGATCCAA 96534 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | | || ||||| ||||||| |||||||| ||||| | ||||| |||||||| | Sbjct 96533 CATGCGTCACCGTCCCATCGGTATCGGTGTTCAGGGTCTCGCCGATGCATTCATGATCAT 96474 Query 55258 CGGATTGCCCTTCGACTCGGAACCTGCT-CGAGAAATT--AACCAGGACATCTTC-AGTC 55313 || | ||||||| || |||| || | || ||| | | |||||| || | Sbjct 96473 GGGTTATGCCTTCGAGTCC---CCTGAGGCGCGTCGTTTGAACGTGCAGATCTTCGAGAC 96417 Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCT-ATGAGCGAGGGGACCTAC 55372 |||||| || || |||||| ||||| | ||||| | |||| | || |||||| Sbjct 96416 -CATCTATCACGCCGCTCTCGAGCGATCGTGCGAGTTGGCTCAGGAGC-ACGGCACCTAC 96359 Query 55373 GAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAG 55432 ||||| | || | |||||| ||| | ||||| || |||| || | |||||| | Sbjct 96358 GAGACATACCAAGGTTCGCCCGCTTCCCAGGGAGAACTTCAGTATGACATGTGGGGC--G 96301 Query 55433 TCTGACCC-----CATGTTTGACAAGT------TGAAGCATGACATTCACTTGTGGGGCC 55481 || ||| | | | ||| | | ||| | | ||| | | || | Sbjct 96300 TCACTCCCTCCGACCTCTGGGACTGGGCTTCGCTCAAGGCTAAGATTGCCAAGCACGGTC 96241 Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 | || ||||| || | |||| || ||||| || || ||||| ||||||| ||||| Sbjct 96240 TTCGTAACTCACTCTTGTTGGCACCCATGCCCACTGCTTCGACCAGTCAGATCTTGGGCT 96181 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601 ||||||| |||||||| ||||| | ||||| ||| || || || || |||| Sbjct 96180 TCAACGAGTGCTTCGAGCCCTACACTTCGAACATTTACTCTCGTCGTGTACTTGCTGGTG 96121 Query 55602 AGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATC-AACA-AG----T 55655 | || || | || ||| | ||| || | || || | || |||| || | Sbjct 96120 AATTC--CAGG-TCGTCAACC-CCTGGTT--GCTCCGCGAGTTGGTCGAACAGAGACTTT 96067 Query 55656 GGAACC-CGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG 55711 ||||| | || || || | || || || | | ||| || ||| |||| || | Sbjct 96066 GGAACGACACA-ATGAAAAACCGAATCATCGCTC---ACGCCGGCTCCATCCAAAACGTC 96011 Query 55712 ---GAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG 55768 | || || ||| ||||| || | ||| ||| || |||||||| | |||||| Sbjct 96010 CCCGGTATCCCCGACCGTATCAAGAAGCTCTACAAGACTGTCTGGGAGATCTCGCAGAAG 95951 Query 55769 AGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAAC 55828 | || |||||| || ||||| ||||| | ||| |||||| ||||| || || Sbjct 95950 GCCATCATCGACATGGCCGCCGATCGAGGTGCTTTCATTTGCCAGTCGCAGTCGCTCAAT 95891 Query 55829 ATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 ||| | || |||| | | | || | | |||||||||||| ||||| |||||| Sbjct 95890 ATCCACCTGTCCGCTCCTACGTTCGGTCAGCTCACCTCGATGCACTTCTACGGCTGGAAG 95831 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 ||||| ||||||||||||| ||||| || || ||| Sbjct 95830 AAGGGTCTCAAGACGGGTACCTACTACCTCCGTACC 95795 >seq1240 Length=316128 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCC-TCGTCGT 119141 |||||| |||||||||||||| ||||| | ||||||||| || | ||| | || |||| Sbjct 141646 GTTGGCGAGCTTGGCACCGTAACCGTTTCTACCACCGGTGAC-CTTGGCTTCGTCATCGT 141588 Query 119142 TGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||| |||||| || | ||||| |||||||||||||||||||| Sbjct 141587 CGTAATTGGAGGAAGTGAGGAGGTGACCAAAGATGAGCTCGGGGAT 141542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198584850800