Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1109 246 3e-60 seq998 188 8e-43 seq1042 150 2e-31 seq1432 129 7e-25 seq2517 114 1e-20 seq505 96.9 4e-15 seq2472 87.8 2e-12 >seq1109 Length=147467 Score = 246 bits (272), Expect = 3e-60 Identities = 805/1232 (65%), Gaps = 33/1232 (3%) Strand=Plus/Plus Query 80539 CCCCACATGTCGTGCTGCAAGATG-CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 ||||||||||| | ||| ||| | |||| || || || || || | | |||||||| Sbjct 96303 CCCCACATGTCATACTG-AAGTTCTCCCTGGGAAGCGGGCGAACCTTGGTATGTCTCGTA 96361 Query 80598 CGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTC 80657 | ||| | | || |||| ||| ||||| | || || |||||||| ||| ||| Sbjct 96362 GGTGCCGTGCTCCTGAGCCAACTCGCACGATCGCTCGAGAGCGGCGTGATAGATGGTCTC 96421 Query 80658 AAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCAT 80717 |||| | ||||| || ||||||| ||| ||||| | | ||||| ||||| Sbjct 96422 GAAGATCTGCACGTTCAAACGACGCGCCTCAGGGGACTCGAAGGCATAACCCATGATCAT 96481 Query 80718 GAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCG 80777 ||| | || || || |||||||| ||||| |||| || ||||| ||| |||| ||||| Sbjct 96482 GAATGCATCGGCGAGACCCTGAACACCGATACCGATGGGACGGTGACGCATGTTGGATCG 96541 Query 80778 CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837 || || || ||||| |||| | ||||||| ||||| ||| | || | Sbjct 96542 ACGAGCTTCTTCAACGGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTT-CTTGCAGA 96600 Query 80838 AACCCGTGTA-ACATCATGAAGTTTCTGAAAGTCGAA----TTGGTTCCCCT-TC-ACAA 80890 | || || ||||| || || || ||| | ||||| | || | | Sbjct 96601 TGGCTTTGGCGACCTCATGCAGACGCTTGAAATCGTAGACCTTGGTAACAGGGTCGATGA 96660 Query 80891 ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACT 80950 | | || ||| | ||| |||| ||||| || || ||||| || | | | ||| Sbjct 96661 AGGTGGGGAGGGCGATGGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACT 96720 Query 80951 CGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACT 81010 ||| |||||| ||||| | || || |||| || ||||| ||||| |||||||| |||| Sbjct 96721 CGATGATTTCGGTGCAGAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACT 96780 Query 81011 TGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGA 81070 || ||| ||||||||||||| ||| | || ||||||||||| ||| |||| || Sbjct 96781 TGCGGTTAGCAGCGTCCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGA 96840 Query 81071 GGATGGCGTCCCAAATCTCGCGCGCCTTGAC---CACCTTGCGGAATTTGCCTTCGGCCA 81127 ||||||||| ||| | || | |||||||| ||| | | | || || ||| Sbjct 96841 GGATGGCGTACCAGAGCTTCTGGGCCTTGACGGTTCGCTTACAGCGT---CCCTCAGCCT 96897 Query 81128 CATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCA 81185 | || |||| || | || |||| | |||||| | || || | ||| | ||||| Sbjct 96898 CGTAGCGCTCGTAGAGACGC-TCAAACTCGTCACCGTAGCAG-TCGGCAAGGCCGGGGCA 96955 Query 81186 CTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTC 81245 ||||||||||||||| || ||| ||| | | ||| || ||||||||| || Sbjct 96956 CTCGTTAGGGCACATGAGCGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATC 97015 Query 81246 AGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAG 81305 |||| ||| || ||| ||| || || ||| || | ||||| | ||| ||||| Sbjct 97016 GGGGACCCAAAGAGCGTAGAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTT 97075 Query 81306 GCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTC----CAGATA--CACGGC 81359 |||||| ||||| || || | || |||| ||||| ||||| ||||| | ||| Sbjct 97076 GCGCAAGTCGAGGAACTCGAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGC 97135 Query 81360 GATCGACCCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACG 81419 | | |||| | ||||| |||| ||||||||| ||||| ||| || ||||| Sbjct 97136 ACCAGGACGCTTGTTA---CCACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACG 97192 Query 81420 CAACATAGGGATGATACCAT--CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTG 81477 | ||| || | |||||| | ||||| |||||| ||||| | || || || | Sbjct 97193 GAGCATGGGCACGATACCGTTGCTGAC--ACCGTTGGTACCGGCAATGTAAGAGCCGGTA 97250 Query 81478 GCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACAC 81537 | || | | ||| |||||||| ||||| | ||| || ||| ||||| Sbjct 97251 CCACGAATGCAGTGGATGTTGAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAG 97310 Query 81538 CGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAG 81597 || | ||| || || || || ||||| || | |||||| | | |||||| Sbjct 97311 GTCTTGAGGGTGTCGTAGATCCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACAC 97370 Query 81598 CTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAA 81657 || | ||||||| | ||||| ||||| || ||||| | || ||| | || Sbjct 97371 GACGAGAGCTGAGGGTGGGGGGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAG 97430 Query 81658 TAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATA 81717 || | ||||| |||| || || || | | | ||| || | ||||||||| Sbjct 97431 TACTTTTGCGACATGAGGTTGTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATA 97490 Query 81718 CCGATAGCTACACGCATAAACATGTACTGGGG 81749 |||| ||| |||||||| | ||||| |||||| Sbjct 97491 CCGACAGCGACACGCATGATCATGTGCTGGGG 97522 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||| | ||||||||||| ||||||||||||||||| | |||||| || Sbjct 95796 GTACGGAGGTAGTAGGTACCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATCGAG 95855 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 |||||| | | || || || | ||| || || ||||| ||||| || ||| Sbjct 95856 GTGAGCTGACCGAACGTAGGAGCGGACAGGTGGATATTGAGCGACTGCGACTGGCAAATG 95915 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 ||||| || ||||| || ||||| || || || | ||| || | || ||||| || || Sbjct 95916 AAAGCACCTCGATCGGCGGCCATGTCGATGATGGCCTTCTGCGAGATCTCCCAGACAGT 95974 >seq998 Length=480981 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| || ||||||||||| ||||| | Sbjct 89114 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCT 89173 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||||||||||||||| ||||| || || ||| Sbjct 89174 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 89233 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 89234 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 89293 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||| | ||||| ||| | |||||||| ||||| Sbjct 89294 ATCCAGAAGGAGTCGACTTTGCATCTTGTCCTCCGTCTTCGTGGTGG 89340 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || || || ||||| ||| | Sbjct 88886 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTTCG 88945 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | |||||||| || ||||||||||| || ||||| || || ||| Sbjct 88946 GACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 89005 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||||| |||||||| | || || || Sbjct 89006 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACAAC 89065 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| |||||||| || | || || || ||||| Sbjct 89066 ATTCAGAAGGAGTCCACCCTTCATCTCGTTCTCCGCCTCCGTGGTGG 89112 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || || || ||||| ||||| Sbjct 167887 ATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCTTCG 167828 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| |||||||| || || ||| Sbjct 167827 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAG 167768 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| ||||| |||| ||| ||||| ||||| || Sbjct 167767 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTTGGACTACAAC 167708 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || ||| | || ||||| ||||| Sbjct 167707 ATCCAGAAGGAGTCTACCCTTCACCTCGTCCTCCGCCTTCGTGGTGG 167661 >seq1042 Length=313568 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||| ||||| || | ||| | || | ||||| Sbjct 114500 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGCC 114559 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || |||||||||||||| || |||||||||||| Sbjct 114560 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTTGCTGGTAAG 114619 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | ||||| | |||| ||||| ||||| ||||| Sbjct 114620 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAGCATCCAGAAGGAGTCCACCCTTCAC 114679 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| || ||||| Sbjct 114680 CTTGTCCTCCGTCTCCGTGGTGG 114702 >seq1432 Length=176812 Score = 129 bits (142), Expect = 7e-25 Identities = 180/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 64642 GAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT---CGT 64698 |||||| | |||| || | || ||||| ||||||||| | || ||||| || || Sbjct 172663 GAGACTATCCCCGTCGTCAAGAAGAAGGCCGAATGGGCCCTTCGATGGATCAACGACCGC 172722 Query 64699 GGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCT 64758 | | | || | | ||||||||| || |||||| || ||||| || ||||| || Sbjct 172723 AAGGCCACCTTCGCTGAGCGTCTCGTTGCCTTTGCCGCCGTCGAAGGTATCTTCTTCTCA 172782 Query 64759 GGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTT 64818 || || || || || |||||||| || ||||| || || ||||| ||||| | || Sbjct 172783 GGCTCCTTTGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTC 172842 Query 64819 TCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTC 64878 || |||||||| |||||||| |||||||| || ||| || ||||| ||| ||| Sbjct 172843 TCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGATTTTGCCTGCCTCCTCTTC 172902 Query 64879 AGCCACCTCAAG 64890 |||||||||||| Sbjct 172903 AGCCACCTCAAG 172914 >seq2517 Length=173 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 27436 AAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATT 27495 ||||| || ||||| || || ||||| || | ||| | ||| | ||||| || || Sbjct 1 AAGACGATCACTCTCGAAGTCGAGTCCTCGGACACCATCGACAATGTCAAGGCCAAGATC 60 Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 ||||||||||| || |||||||| ||||||||||| | || |||||||||||||||||| Sbjct 61 CAGGACAAGGAAGGTATTCCTCCTGACCAGCAGCGATTGATCTTTGCTGGTAAGCAACTC 120 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 ||||| | || || || | ||||| || | || ||||| Sbjct 121 GAGGACGGCCGCACTCTTTCCGACTACAACATTCAGAAGGA 161 >seq505 Length=37254 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| ||||| || ||||| || || ||||| Sbjct 37134 ATGCAGATCTTCGTCAAGACTCTGACCGGTAAGACGATCACTCTCGAAGTCGAGTCCTCG 37193 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 37194 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 37253 Query 27526 C 27526 | Sbjct 37254 C 37254 >seq2472 Length=237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||||||| | || || ||||| || ||||| || || ||||| Sbjct 117 ATGCAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCG 176 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||| || |||||||| |||||| Sbjct 177 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 236 Query 27526 C 27526 | Sbjct 237 C 237 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27520 GACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGAC 27579 ||||||||||| | || ||||||||||||||||||||||| | || || || | ||| Sbjct 3 GACCAGCAGCGATTGATCTTTGCTGGTAAGCAACTCGAGGACGGCCGCACTCTTTCCGAC 62 Query 27580 TATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || | || ||||| ||| | ||||| ||| | |||||||| ||||| Sbjct 63 TACAACATTCAGAAGGAGAGCACCTTGCATCTCGTCCTCCGTCTTCGTGGTGG 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570292249871520