Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2517 91.5 9e-14 seq2472 82.4 5e-11 >seq2517 Length=173 Score = 91.5 bits (100), Expect = 9e-14 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34510 GTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCG 34569 ||||||||||| |||||||| || || ||||| || || |||| || ||||| ||||| Sbjct 167 GTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTACCA 108 Query 34570 GCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||||| || || ||||| ||||| || || | || |||||||| |||||| Sbjct 107 GCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTT 55 >seq2472 Length=237 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||| | ||||||||||| |||||||| || || ||| Sbjct 115 CCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 56 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTC 34592 || || || |||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 55 AGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719834137218