Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1042 178 1e-39 >seq1042 Length=313568 Score = 178 bits (196), Expect = 1e-39 Identities = 463/713 (65%), Gaps = 30/713 (4%) Strand=Plus/Plus Query 6449 AAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGG 6508 ||||||||| | | ||||||||||| ||||| || | || ||||||| |||| Sbjct 41978 AAGTCCTCGTACTTGAAGTCATCGATATCGGTGATATGGCGCTTTATGTTGAGCTTGGGG 42037 Query 6509 AACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATA 6568 || || || || || | ||||||||| ||| |||| | ||| | ||||| Sbjct 42038 AAGGGCAATGGTTCACGCTCGAGCTGGATCTTGAGTGGCTCTACGTGATCTTTGTAGACG 42097 Query 6569 TGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATC 6628 || || || |||| || | |||| || ||| || | | | ||| | ||||||| Sbjct 42098 TGAGCGTCTCCCATCGAAAGCACGAGTTCCTTGGGCTCGCAATCAGTGACTTTAGCGATC 42157 Query 6629 ATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCC 6688 || || ||||||| |||||| || ||||||||||| || || || ||||| | || | Sbjct 42158 ATATAGGTGAGCAAAGCGTAGCTGGCAATGTTGAAGGGGACTCCCAACCCGAGATCGCAG 42217 Query 6689 GATCGTTGATAGAGCTGGCAGGACAGCT--------CCCCA------------------- 6721 || ||||| || | || || || |||| ||||| Sbjct 42218 GAACGTTGGTACATTTGACAAGAGAGCTGCTTCTTGCCCCAACCCTTTGCGTAAGCGTCG 42277 Query 6722 ---TTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGA 6778 || | |||| |||| ||||||| ||||||| || ||||| ||||| |||| ||| Sbjct 42278 AGGTTGGAGACGAAGAACTGGCAGAACATGTGGCAAGGAGGGAGAGCCATGAGAGCAAGA 42337 Query 6779 TCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTG 6838 || || |||||||| || | | || |||||| | || ||||| ||| | || Sbjct 42338 TCTTTGGGGTTCCATGCACTGAGCAAGATCCTGCGATCGGTGGGGTTGTTCTTGATCTTG 42397 Query 6839 TCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGA 6898 || || || | ||| ||||| | || || || | ||||| | |||| || Sbjct 42398 TCAATGACTTCACGCAATTGGTCAACGCCTTGACCGGTGTAGTCGGTGTCGCAGTCCTTG 42457 Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||||| ||| ||||| |||||||| || ||||| || || || | Sbjct 42458 TATTCTGCGCCAAAGTGTCGCCATTGGAAGCCGTAGACTGGACCCAAATCACCTTCTCGC 42517 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | || | || ||| || || ||||| || |||| | |||||||||| | | Sbjct 42518 CGGTGTTGCAAGTCACGTGAGTCGAGGAACTCTCGCGATCCGTTACCGTCCCAGATGTGC 42577 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCC 7078 || ||| | | || ||||| || || || ||| ||||| || |||||| Sbjct 42578 ACGCCCTTGTCAGTAAGAAGCTTGGAGTCGGTCTTGCCAGCCACAAACCAGAGGAGCTCC 42637 Query 7079 TCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCC 7131 || | ||||| | || | ||||| || || || ||||| || | ||||| Sbjct 42638 TCCAGTACGCCTCGCAAGAAGACACGCTTTGTGGTGAGCAGAGGCAGATCGCC 42690 Score = 178 bits (196), Expect = 1e-39 Identities = 463/713 (65%), Gaps = 30/713 (4%) Strand=Plus/Minus Query 34214 GGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTG 34273 ||||| | || ||||| || || || ||||| | || | ||||| | |||||||| Sbjct 42690 GGCGATCTGCCTCTGCTCACCACAAAGCGTGTCTTCTTGCGAGGCGTACTGGAGGAGCTC 42631 Query 34274 CTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATC 34333 || ||||| ||| || || || ||||| || | | ||| ||| | ||| Sbjct 42630 CTCTGGTTTGTGGCTGGCAAGACCGACTCCAAGCTTCTTACTGACAAGGGCGTGCACATC 42571 Query 34334 TGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAG 34393 ||||||| | |||| || ||||| || || ||| || | || | | ||| || Sbjct 42570 TGGGACGGTAACGGATCGCGAGAGTTCCTCGACTCACGTGACTTGCAACACCGGCGAGAA 42511 Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || || ||||| || |||||||| ||||| ||| |||||||||| || || || || Sbjct 42510 GGTGATTTGGGTCCAGTCTACGGCTTCCAATGGCGACACTTTGGCGCAGAATACAAGGAC 42451 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTG 34513 |||| | ||||| | || || || | ||||| ||| | || || |||| | Sbjct 42450 TGCGACACCGACTACACCGGTCAAGGCGTTGACCAATTGCGTGAAGTCATTGACAAGATC 42391 Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||| ||||| || | |||||| || | | || |||||||| || ||||| || Sbjct 42390 AAGAACAACCCCACCGATCGCAGGATCTTGCTCAGTGCATGGAACCCCAAAGATCTTGCT 42331 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAA---------- 34623 || ||||| ||||| || ||||||| ||||||| |||| |||| | || Sbjct 42330 CTCATGGCTCTCCCTCCTTGCCACATGTTCTGCCAGTTCTTCGTCTCCAACCTCGACGCT 42271 Query 34624 ------------TGGGG--------AGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 ||||| |||| || || || | || ||||| || | || Sbjct 42270 TACGCAAAGGGTTGGGGCAAGAAGCAGCTCTCTTGTCAAATGTACCAACGTTCCTGCGAT 42211 Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 | ||||| || || || ||||||||||| || |||||| ||||||| || ||||||||| Sbjct 42210 CTCGGGTTGGGAGTCCCCTTCAACATTGCCAGCTACGCTTTGCTCACCTATATGATCGCT 42151 Query 34724 CATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTAC 34783 | ||| | | | || ||| || |||| | || |||| || || || ||||| Sbjct 42150 AAAGTCACTGATTGCGAGCCCAAGGAACTCGTGCTTTCGATGGGAGACGCTCACGTCTAC 42091 Query 34784 CTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAG 34843 | ||| | |||| ||| ||||||||| | || || || || |||||| || Sbjct 42090 AAAGATCACGTAGAGCCACTCAAGATCCAGCTCGAGCGTGAACCATTGCCCTTCCCCAAG 42031 Query 34844 CTCAAAATTATTCGAGCCGTCACCTCAATCGATGACTTTAGGAGCGAGGACTT 34896 ||||| || | || ||||| ||||||||||| | | ||||||||| Sbjct 42030 CTCAACATAAAGCGCCATATCACCGATATCGATGACTTCAAGTACGAGGACTT 41978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448248134049120