Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq998 107 1e-18 seq2517 91.5 1e-13 >seq998 Length=480981 Score = 107 bits (118), Expect = 1e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || ||||||||||||||||| || |||||||| ||||| || || || Sbjct 167890 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCT 167831 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | || | | || || || ||||| ||||| | || || ||| Sbjct 167830 TCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGAT 167771 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATT 23785 || |||||| | || ||||| || || || || ||||| | |||| |||| | || | Sbjct 167770 CAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTTG--GACT 167713 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || || ||||| || Sbjct 167712 ACAACATCCAGAAGGAGTCTAC 167691 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| ||||| || || | || Sbjct 88886 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTTCG 88945 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || || ||||| Sbjct 88946 GACACCATTGACAATGTCAAGGCTAAGA-TCCAGGACAAGGAAGGCATTCCCCCTGATCA 89004 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || || || || | || || | |||||||| Sbjct 89005 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACAA 89064 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || |||||||| | ||| | ||| Sbjct 89065 CATTCAGAAGGAGTCCACCCTTCATCTCGTT 89095 >seq2517 Length=173 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 23641 AAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAAT 23699 || ||||||||||||||||| || ||| ||||||| | || ||| | || | || || Sbjct 1 AAGACGATCACTCTCGAAGTCGAGTCCTCGGACACCATCGACAATGTCAAGGC-CAAGAT 59 Query 23700 TGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACT 23759 ||||| |||||| | || || || || ||||| || || ||||| || || ||||| Sbjct 60 CCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGCGATTGATCTTTGCTGGTAAGCAACT 119 Query 23760 GGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 || |||| |||||| | ||| |||||||| || || ||| ||| || || Sbjct 120 CGAGGACGGCCGCACTCTTTCCGACTACAACATTCAGAAGGAGAGCACCTTGCA 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999111773368