Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq998 187 5e-42 seq2517 168 1e-36 seq1042 143 6e-29 seq505 129 1e-24 seq2472 125 1e-23 seq9 100 6e-16 >seq998 Length=480981 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| || || || || |||||||||||||| | Sbjct 89341 ACCACCACGAAGACGGAGGACAAGATGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 89282 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||||||||| || || || || || |||||||| | ||| || || ||| || Sbjct 89281 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGG 89222 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| || || ||| | ||||| ||||| || | ||||| Sbjct 89221 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGGACTCGAC 89162 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 89161 CTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 89114 Score = 178 bits (196), Expect = 3e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || |||||||||||||| Sbjct 167660 ACCACCACGAAGGCGGAGGACGAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCAA 167719 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||| || || || || || |||||||| | ||| || || ||| || Sbjct 167720 AAGGGTGCGACCATCTTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGATCAGGGGG 167779 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || ||| | ||||| |||||||||| ||||| Sbjct 167780 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 167839 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||||||||||||||| | || ||||| || |||||||| || Sbjct 167840 CTCGAGGGTGATCGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCATCTT 167890 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | ||| || || || |||||||| || | Sbjct 89113 ACCACCACGGAGGCGGAGAACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCCGA 89054 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || ||||| | ||| || || ||| || Sbjct 89053 GAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGATCAGGGGG 88994 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || || | || || |||||||||| ||||| Sbjct 88993 AATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCCGAAGGCTCGAC 88934 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 88933 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 88886 >seq2517 Length=173 Score = 168 bits (186), Expect = 1e-36 Identities = 141/173 (82%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGT 282956 || || ||||| || || || ||||||||||| | ||| |||||||| ||||| ||||| Sbjct 173 TGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGC 114 Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||||||||| || || |||||| |||||||| |||||||| |||||||| Sbjct 113 TTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTG 54 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 || || || | ||||| |||||||| | ||||||||||||||||||||||| Sbjct 53 GCCTTGACATTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTGATCGTCTT 1 >seq1042 Length=313568 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | ||| || || |||||| ||||||| | Sbjct 114703 ACCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGCTGTAGTCCGA 114644 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || |||||||| | ||| || ||||| || Sbjct 114643 GAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCGGGGGG 114584 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || ||| | ||||| ||||| |||| || || Sbjct 114583 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 114524 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| |||||||| || Sbjct 114523 CTCAAGGGTGATGGTCTTACCTGT 114500 >seq505 Length=37254 Score = 129 bits (142), Expect = 1e-24 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 |||||| |||||||| |||||||| |||||||| || || || | ||||| |||||| Sbjct 37252 TGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCC 37193 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||||||||||||||||||||||| |||| |||||| ||||| |||||||| Sbjct 37192 GAGGACTCGACTTCGAGAGTGATCGTCTTACCGGTCAGAGTCTTGACGAAGATCTGCAT 37134 >seq2472 Length=237 Score = 125 bits (138), Expect = 1e-23 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 |||||| |||||||| |||||||| |||||||| || || || | ||||| |||||| Sbjct 235 TGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCC 176 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||||||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 175 GAGGACTCGACTTCGAGAGTGATCGTCTTTCCTGTCAACGTCTTGACGAAAATCTGCAT 117 Score = 109 bits (120), Expect = 1e-18 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| || ||||| || || || ||||||||||| | Sbjct 116 ACCACCACGAAGACGGAGGACGAGATGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 57 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| ||||| || || ||||||||||| || || |||||| Sbjct 56 AAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCA 2 >seq9 Length=16159 Score = 100 bits (110), Expect = 6e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||||| ||| | || || || || ||||| || || || ||||||||||| | Sbjct 116 ACCTCCACGCAAGCGCAAGACGAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCGGA 57 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| ||||| || || ||||||||||| || || |||||| Sbjct 56 AAGAGTGCGGCCGTCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGGTCA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046705054713084