Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq998 147 5e-30 seq1042 122 2e-22 seq2517 114 3e-20 seq2472 100 7e-16 seq505 96.9 8e-15 >seq998 Length=480981 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || || ||||||||||||||||| || || ||| Sbjct 167884 CAGATCTTTGTTAAAACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGTCTTCGGAC 167825 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| |||||||| || || || ||||| Sbjct 167824 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGATCAGCAG 167765 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||||||||| | || ||| || || ||| || Sbjct 167764 CGTCTCATCTTTGCTGGTAAGCAGCTCGAAGATGGTCGCACCCTTTTGGACTACAACATC 167705 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 167704 CAGAAGGAGTCTACCCTTCACCTCGT 167679 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || || || || ||||| || ||||| || ||| ||| Sbjct 89117 CAGATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGAC 89176 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || || || || || ||||| Sbjct 89177 ACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAGCAG 89236 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| |||||||| | || || |||| || ||| || Sbjct 89237 CGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAACATC 89296 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||||||||| Sbjct 89297 CAGAAGGAGTCGACTTTGCATCTTGT 89322 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || |||||||||||||| || || ||| Sbjct 88889 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGCCTTCGGAC 88948 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| |||||||| ||||| || || || || ||||| Sbjct 88949 ACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGCAG 89008 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | || || | ||||| ||| | Sbjct 89009 CGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCGGATTACAACATT 89068 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||| ||| Sbjct 89069 CAGAAGGAGTCCACCCTTCATCTCGTT 89095 >seq1042 Length=313568 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 ||||| || || |||||||| |||||||| || ||||||||||| |||||||| Sbjct 114500 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGCC 114559 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| || |||||||| || || ||||| || || || Sbjct 114560 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTTGCTGGTAAG 114619 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || || | || || | | |||| || || || || || || Sbjct 114620 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAGCATCCAGAAGGAGTCCACCCTTCAC 114679 Query 178125 CTTGT 178129 ||||| Sbjct 114680 CTTGT 114684 >seq2517 Length=173 Score = 114 bits (126), Expect = 3e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATT 178010 || |||||||| ||||| || || ||| ||||||||||| || ||||| ||||| Sbjct 1 AAGACGATCACTCTCGAAGTCGAGTCCTCGGACACCATCGACAATGTCAAGGCCAAGATC 60 Query 178011 CAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTC 178070 |||||||| ||||| || ||||| |||||||| ||| | ||||| || || || || ||| Sbjct 61 CAGGACAAGGAAGGTATTCCTCCTGACCAGCAGCGATTGATCTTTGCTGGTAAGCAACTC 120 Query 178071 GAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 || || || | |||||| |||| || ||| | || || || Sbjct 121 GAGGACGGCCGCACTCTTTCCGACTACAACATTCAGAAGGA 161 >seq2472 Length=237 Score = 100 bits (110), Expect = 7e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || | |||||||| |||||||| ||||| || || ||| ||| Sbjct 120 CAGATTTTCGTCAAGACGTTGACAGGAAAGACGATCACTCTCGAAGTCGAGTCCTCGGAC 179 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||| || ||||| ||||| |||||||| ||||| || ||||| ||||||| Sbjct 180 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGC 237 >seq505 Length=37254 Score = 96.9 bits (106), Expect = 8e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || || || |||||||| ||||| || || ||| ||| Sbjct 37137 CAGATCTTCGTCAAGACTCTGACCGGTAAGACGATCACTCTCGAAGTCGAGTCCTCGGAC 37196 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||| || ||||| ||||| |||||||| ||||| || ||||| ||||||| Sbjct 37197 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGC 37254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203691933535924