Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq383 104 5e-17 >seq383 Length=18078 Score = 104 bits (114), Expect = 5e-17 Identities = 304/458 (66%), Gaps = 18/458 (4%) Strand=Plus/Plus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 |||||||||||||| || || ||||||||||| ||| | | || || ||| Sbjct 14917 GTGAAGATATACCTGGCCGAGGCAGCATCTTTACCACCGAGCAAACGAGTACCGAATTGA 14976 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 ||| ||| | | |||| | ||| ||||| |||||| | | ||| || || ||| Sbjct 14977 CCCCTAGGCTCGAGCAAGTTGACGTTGTTGCTACCGACGAAGTTCTGCGCGAGACCCACG 15036 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921 || ||| |||||| ||||||||||| || || || ||| || | ||| Sbjct 15037 ATGGTCATGGTAAGCGACTGTTCACCGTGGTGGTAAGCAGTGGTACCGGAGACGTGACCG 15096 Query 281922 CTGAACTGTGCTACCTTCACGTCTGA-TGTCA-AGTTGCGTTTGAAAGCGCAATATAATA 281979 || ||| || ||||| | ||| | |||| ||||| ||||| | | | | | Sbjct 15097 ACGAGCTGAGCGACCTTGA--TCTCACCGTCACCCTTGCGGTTGAAGGTACCGAAGATGA 15154 Query 281980 CTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGC----GTTCCAGG 282035 | ||||||||| ||||||| |||||| ||| | ||||| || | ||| || Sbjct 15155 CCTTTCGTTGACCTGGCTTGAGACCATCGACGGCGGACGGGATCGAACGCATGTTGTCGG 15214 Query 282036 TCATACCGCGAGAACAAAATAAGTTCCTTGTCAATGAAGTCGGGA-ACGGGAACCTCGGG 282094 ||| |||||| | ||| || ||||||| ||||| |||| | | || | ||| | Sbjct 15215 CCAT----CGAGAAGAGAATGAGCTCCTTGTTGATGAAATCGGCATAAGGAATCCTATCG 15270 Query 282095 CTTCTTGTGGTCAAGTTGGTTTCCCGGCTCGTA--TGCCGTCATCCACTCCTTGCGATCC 282152 | |||||||| || | | |||| || ||| | || || | ||||||||| || || Sbjct 15271 -ATGTTGTGGTCGAGGTAGGTTCCAGG-TCGAAACTGTCG-GAGCCACTCCTTTCGGTCA 15327 Query 282153 TCGGCCCGAGTCTTGTTGAAAGAACGATCGATGAGCTC 282190 || ||| |||||||||||| | |||| |||||||| Sbjct 15328 TCCGCCTTCTTCTTGTTGAAAGCAAGATCAATGAGCTC 15365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057612784281920