Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq957 116 2e-21 seq17 109 4e-19 seq93 98.7 6e-16 seq29 82.4 5e-11 >seq957 Length=1833 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | |||||| || ||||| || ||||| || ||| Sbjct 206 CCGCCACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGAC 265 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||| || || || ||||| | ||||||||||| || Sbjct 266 AGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGA 325 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | |||| || | |||||||| Sbjct 326 ATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACT 385 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || ||||| || || |||||||||||||| Sbjct 386 TCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCAT 432 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| || || || | || Sbjct 677 AGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCC 736 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||||||||| |||||||| ||| || | | ||||||||| Sbjct 737 TCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 796 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || || | |||||||| Sbjct 797 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 856 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| ||||| || || ||||||||||| Sbjct 857 TTACCGGTCAGAGTCTTTACGAAGATCTGCAT 888 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| | ||| || || || || || ||| || || |||||||| || || Sbjct 434 CCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAG 493 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || || || || || ||||||||||| ||| Sbjct 494 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 553 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | || | | || | || | || ||||| Sbjct 554 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACT 613 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| |||||||| | || || |||||||||||||| Sbjct 614 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 660 >seq17 Length=97802 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| |||||||| ||||||||||| || || ||| | || Sbjct 47438 AGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 47379 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| |||||||| || || | || |||||||| Sbjct 47378 TCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATGCCTTCCTTGTCC 47319 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || ||||| || | |||||||| Sbjct 47318 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 47259 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| || || ||||||||||||||| Sbjct 47258 TTGCCGGTGAGGGTCTTGACAAAGATCTGCATC 47226 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || || || || || || ||||| |||||||||||||| Sbjct 47681 CCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 47622 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | |||||||||||| || || || ||||||||||| ||| Sbjct 47621 AGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 47562 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | | | | || | || | |||||||| Sbjct 47561 ATACCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACC 47502 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || |||||||| | ||| || || ||||| ||||| Sbjct 47501 TCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 47455 >seq93 Length=51913 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || || || || | || || | ||||||||| || || Sbjct 49116 TCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAG 49057 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| |||||||| || ||| | || |||||||| ||||| ||| | || | Sbjct 49056 ATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 48997 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || ||||| || | |||||||| || || ||||| ||||| ||| Sbjct 48996 TCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACA 48937 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 48936 AAGATCTGCATC 48925 >seq29 Length=82580 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||| || || ||| |||| Sbjct 52004 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 52063 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| |||||||||||| ||| | | ||||||||| Sbjct 52064 TCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 52123 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || || || | |||||||| Sbjct 52124 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 52183 Query 34358 TTGCCGGT 34365 || || || Sbjct 52184 TTACCTGT 52191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323010638935040