Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq97 165 1e-35 seq539 127 3e-24 >seq97 Length=50192 Score = 165 bits (182), Expect = 1e-35 Identities = 445/678 (66%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | |||||| || |||| | || || | ||||| |||||||| |||| | Sbjct 18489 GGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACC 18430 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || ||||| || || || | | | | ||| || || || ||||| | Sbjct 18429 CAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAG 18370 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | ||| || ||||| || || | ||| ||||| | | || || Sbjct 18369 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGA 18310 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | ||| | |||||||| || | || | | ||| ||| Sbjct 18309 CGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGA 18250 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| | ||| ||||| |||| || || ||| | | ||||| | Sbjct 18249 ACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGAATGC-A 18191 Query 63534 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 | | || | | ||| || || || || | || ||||| | || || || | || Sbjct 18190 GTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGT 18131 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 ||| || ||||| || || ||||| ||||| || || |||||| || | || Sbjct 18130 GTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTG 18071 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 || | | ||| || || || || | ||| || || ||||| ||||| | |||| || Sbjct 18070 AGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGA 18011 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772 | || ||||| ||||| ||||| || || ||| ||||| || || ||||| Sbjct 18010 CATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACAGCGAC 17951 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | ||||||||| || | ||| ||| ||| ||| || | ||||||||| Sbjct 17950 ACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTAGGA 17891 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 || | ||| || || || ||| ||||||| ||||| || ||||| || ||| | Sbjct 17890 ACGCTCGAGAGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATAGC 17831 Query 63893 CGAATTGAGCTTATCCTT 63910 ||| | |||| ||||| Sbjct 17830 CGAGTCAAGCTGGTCCTT 17813 >seq539 Length=9559 Score = 127 bits (140), Expect = 3e-24 Identities = 368/562 (65%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||| ||||||||||| | || | ||||| || || ||||| Sbjct 6087 CAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGA 6028 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || |||||||| || ||||| || || || ||||| || ||||| |||||| Sbjct 6027 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAG 5968 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGT 33758 || || ||||| || |||||||||| || | |||| || | ||| | ||| Sbjct 5967 ATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCTTTCGGTCGCTA 5908 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| || ||||||| || || || || ||||| | ||| | | Sbjct 5907 ATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCA 5848 Query 33819 AAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||||| | || | | || || | ||||| ||||| | ||| ||| Sbjct 5847 AAGAGGAA----TTCGCGCTGCTCGGGCTCACGGATGTAAGTGTCGATGAGAAGCGAATA 5792 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 | || || || ||||| || || ||||| || |||||||| |||| |||||||| Sbjct 5791 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGC 5732 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 | ||| || || | || || || || | | || || || || || ||||| || Sbjct 5731 AGCCTGAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGC 5672 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT-- 34051 || || || || | || || || || | |||| || ||| || || || Sbjct 5671 AGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGT-TGTCGTTGAGCTTGTTGT 5613 Query 34052 -CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| |||| | || || || | || | || || | ||||| || || ||||| | Sbjct 5612 CCCAGTCATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCCTCGG 5553 Query 34111 CCTTTTTATACATATTCCAGAT 34132 |||| || ||||| | |||||| Sbjct 5552 CCTTCTTGTACATTTGCCAGAT 5531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629694911531520