Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq97 152 7e-32 seq539 111 2e-19 >seq97 Length=50192 Score = 152 bits (168), Expect = 7e-32 Identities = 442/678 (65%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086 || ||||| | |||||| || |||| | || || | ||||| |||||||| |||| | Sbjct 18489 GGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACC 18430 Query 66087 CAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146 || ||||| || | || | || | | ||| || || || ||||| | Sbjct 18429 CAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAG 18370 Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 66206 ||||||||| | | | ||| | ||||| || || | ||| ||||| | | || || Sbjct 18369 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGA 18310 Query 66207 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 66266 || ||||| || ||||| || | ||| | |||||||| || | || | | ||| ||| Sbjct 18309 CGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGA 18250 Query 66267 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA 66326 | ||||| ||| ||| ||||| |||| || || ||| | | ||||| | Sbjct 18249 ACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGAATGC-A 18191 Query 66327 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 66385 | | || | | ||| || || || || | || ||||| | || || || | || Sbjct 18190 GTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGT 18131 Query 66386 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 66445 || || ||||| || || |||||| ||||| || || |||||| || | || Sbjct 18130 GTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTG 18071 Query 66446 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 66505 || | ||| || || || || | ||| || || ||||| ||||| | |||| || Sbjct 18070 AGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGA 18011 Query 66506 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 66565 | || ||||| ||||| ||||| || || ||| ||||| || || ||||| Sbjct 18010 CATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACAGCGAC 17951 Query 66566 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 66625 |||||| | ||||||||| || | ||| | | |||| ||| || | ||||||||| Sbjct 17950 ACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTAGGA 17891 Query 66626 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 66685 || | ||| || || || ||| ||||||| ||||| || ||||| || ||| | Sbjct 17890 ACGCTCGAGAGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATAGC 17831 Query 66686 CGAGTTGAGTTTATCCTT 66703 ||||| || | ||||| Sbjct 17830 CGAGTCAAGCTGGTCCTT 17813 >seq539 Length=9559 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| ||| ||| ||||||||||| | || | |||||||| || ||||| Sbjct 6087 CAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGA 6028 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277 |||||||| || |||||||| || ||||| || || || || || || || || ||||| Sbjct 6027 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAG 5968 Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 36316 || || ||||| ||||||||||||| || | |||| || Sbjct 5967 ATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCA 5929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658044587938560