Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq97 141 1e-28 seq539 125 1e-23 >seq97 Length=50192 Score = 141 bits (156), Expect = 1e-28 Identities = 608/954 (64%), Gaps = 8/954 (1%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | ||||| || || | | | || | ||||| Sbjct 18504 CCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATG 18445 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| |||| ||| ||||| || || || | || | | || || || || Sbjct 18444 AAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCG 18385 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| | ||||||||| | | | ||| || ||||| || || | ||| ||| Sbjct 18384 TGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATG 18325 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | ||| | |||||||| || | Sbjct 18324 GCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAG 18265 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| |||| ||||| ||| |||| ||||| |||| || || ||| Sbjct 18264 ACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCA 18205 Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 | | ||||| | ||| | ||| || || || || | || ||||| | || Sbjct 18204 GTACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCA 18145 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 || || | || || || ||||| || || |||||| ||||| || || ||| Sbjct 18144 CAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAA 18085 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 ||| || | || || | ||| || || || || | ||| || || ||||| ||| Sbjct 18084 CAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTA 18025 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGT 72513 || | |||| |||| || ||||| ||||| ||||| || || ||| || Sbjct 18024 AAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGA 17965 Query 72514 ATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATT 72573 || || || ||||||||||| | ||| ||||| || | ||| | | |||| || || Sbjct 17964 ATACCAACAGCGACACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATG 17905 Query 72574 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 72633 | ||||||||| || | ||| || || || ||| ||||||| ||||| || Sbjct 17904 CGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCGCGC 17845 Query 72634 TCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATA 72693 ||||| || ||| |||| | || | ||||| | | | || | | |||| | Sbjct 17844 TCGTAGATGATAGCCGAGTCAAGCTGGTCCTTGTGCTCCATGACGACCTTGTAGGTGGCA 17785 Query 72694 CTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCC 72753 || || || || ||| | || || || || || ||||| | | | || |||| Sbjct 17784 TCAGAGATCATAGGGCTGTGTCTGCCGTTCTTGGGGTTGACATACTCGTACAAGTCCTGG 17725 Query 72754 ATCACTTCACTAAATAGttttt--ttGTTTCCTTGTGTAGATTTGAT-ACGGCTATTCTG 72810 | |||| || | |||| || | || |||||||| | | ||| | | ||| || | Sbjct 17724 ACGACTTGGCTGA--AGTTCTTGCTAGTCTCCTTGTGCA-AGTTGCTGATGGCAATACGC 17668 Query 72811 GCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCTGCTGC 72869 || || || | |||||| ||||| ||| ||| || | || ||| || | || || || Sbjct 17667 GCAGCAAGGACGGCATAGTCTGGGTGTGTTGTTGT-CTTGTAGGCGGCAGTCTCGGCAGC 17609 Query 72870 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 || |||| | ||||| || || || || | || || || | ||| || || Sbjct 17608 AAGGTTGTCAAGCTCTACGGTGGTGACACCCTCGTAGATACCGTCGATGACTTT 17555 >seq539 Length=9559 Score = 125 bits (138), Expect = 1e-23 Identities = 277/414 (67%), Gaps = 11/414 (3%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| ||| |||||||| || | || | |||||||| || ||||| Sbjct 6087 CAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGA 6028 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || |||||||| || ||||| || ||||| || || || || || |||||| Sbjct 6027 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAG 5968 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---ACTGTCATGT 42241 || || ||||| ||||||||||||| || | |||| || | ||| | ||| Sbjct 5967 ATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCTTTCGGTCGCTA 5908 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| | ||||| || ||||||| || || || || ||||| | ||| | | Sbjct 5907 ATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCA 5848 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTA----TCGATCAAAAGACTATA 42357 ||||| | || | | || | || ||||| ||||| | ||| ||| Sbjct 5847 AAGAGGAA----TTCGCGCTGCTCGGGCTCACGGATGTAAGTGTCGATGAGAAGCGAATA 5792 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 | || || || ||||| || || ||||| || |||||||| |||| ||||||| Sbjct 5791 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGC 5732 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 | |||| || || | || || || || | | || ||||| || || || || Sbjct 5731 AGCCTGAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATC 5678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671008462083840