Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq957 111 1e-19 seq93 98.7 8e-16 >seq957 Length=1833 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | | ||| | ||||| |||||||| ||| || | Sbjct 697 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAA 756 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||| | |||||||||||| || | || ||||||||| ||| || ||||| | Sbjct 757 AATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTT 816 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| ||||||| ||||| || ||||| |||||||| ||||| || Sbjct 817 GTCG--ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTT 874 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 875 ACGAAGATCTGCAT 888 >seq93 Length=51913 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || ||||||||||| | | || | || || |||||| Sbjct 49128 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCGAGCTGC 49069 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || | |||||||||||| || | | |||||||||| || || Sbjct 49068 TTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 49009 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | |||||| ||||| || ||||| ||||| ||| Sbjct 49008 GCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTG 48949 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTG 48730 || ||||| ||||| ||||||||| || Sbjct 48948 AGGGTTTTAACAAAGATCTGCATCTTG 48922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421171191759584