Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq90 165 1e-36 >seq90 Length=52578 Score = 165 bits (182), Expect = 1e-36 Identities = 185/246 (75%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||||| | ||||| |||||||| || ||||||||||| |||||||| ||||| || || Sbjct 10159 CAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTATCCGACGTCTCGCGCG 10101 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 ||||||||| ||||||||| ||||||| | |||| || |||| |||| ||| | || Sbjct 10100 TCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTACGATGAGACCCGTGGTGTACTCAA 10041 Query 16567 GATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAA 16626 | ||||||| || | ||||||| || | || ||| || |||||||| || || || Sbjct 10040 GCTCTTCCTTGAGTCGGTTATCCGCGACTCGGTCACCTACACTGAGCACGCCAAGCGCAA 9981 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686 |||||||||||| | || | ||||| || | || || || ||||| | | || || Sbjct 9980 GACTGTCACCTCGCTCGACGTTGTCTACGCTCTCAAGCGCCAGGGCCGAACCCTCTACGG 9921 Query 16687 TTTTGG 16692 ||| || Sbjct 9920 TTTCGG 9915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060951439712