Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq93 95.1 1e-14 seq957 89.7 4e-13 >seq93 Length=51913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||| ||||| | || || || | || ||| |||| |||||| | Sbjct 48922 CAAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTC 48981 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||||||||| | ||||| ||||| ||||| |||||||| || || || Sbjct 48982 TTCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGA 49041 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | || || | | ||||||||| |||||||||| | | | || ||||| Sbjct 49042 TCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGGATTA 49101 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || || |||| Sbjct 49102 CAACATCCAGAAGGAGTCCACCCTTCA 49128 >seq957 Length=1833 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || || | ||||| ||||||||||| || Sbjct 660 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 601 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| || || |||||||| || || || || Sbjct 600 GACACTATCGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 541 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | || ||||| |||||||| | | ||| | || ||||| ||| Sbjct 540 CAGCGCCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACAAC 481 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| ||||| || | ||| | || | ||||| |||| || Sbjct 480 ATCCAAAAGGAATCCACGTTGCATCTCGTTCTGCGATTGCGAGGTGG 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429854342255520