Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq97 172 7e-38 seq539 111 2e-19 >seq97 Length=50192 Score = 172 bits (190), Expect = 7e-38 Identities = 619/958 (65%), Gaps = 10/958 (1%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||| | |||||| || |||| | || || | ||| Sbjct 18507 AGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTC 18448 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| |||| ||| ||||| || || || | || | | ||| || || Sbjct 18447 ATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTA 18388 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| | ||||||||| | | | ||| || ||||| || || | ||| Sbjct 18387 CCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAG 18328 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | || || || ||||| || ||||| || | ||| | |||||||| || Sbjct 18327 ATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTG 18268 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| |||| ||||| ||| ||| ||||| || | || || Sbjct 18267 AAGACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAG 18208 Query 63320 CCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAA 63378 ||| | | ||||| | | | || | | ||| || || || || | || ||||| | Sbjct 18207 CCAGTACCTCGAATGC-AGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCAT 18149 Query 63379 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 63438 || || || | || || || ||||| || || |||||| ||||| || || Sbjct 18148 GGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAG 18089 Query 63439 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63498 |||||| || | || || | ||| || || || || | ||| || || ||||| Sbjct 18088 GAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTG 18029 Query 63499 AGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63558 |||||| | |||| || | || ||||| ||||| ||||| || || ||| Sbjct 18028 AGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCC 17969 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 ||||| || || ||||||||||| | ||||||||| || | ||| | | |||| ||| Sbjct 17968 GTGAATACCAACAGCGACACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTT 17909 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 || | ||||||||| || | ||| || || || ||| ||||||| ||||| Sbjct 17908 GATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTC 17849 Query 63679 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGT 63738 || ||||| || ||| |||||| || | ||||| | | | || || | ||| Sbjct 17848 GCGCTCGTAGATGATAGCCGAGTCAAGCTGGTCCTTGTGCTCCATGACGACCTTGTAGGT 17789 Query 63739 AATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATC 63798 | || || ||||| ||| | || || || || |||||||| | | | || || Sbjct 17788 GGCATCAGAGATCATAGGGCTGTGTCTGCCGTTCTTGGGGTTGACATACTCGTACAAGTC 17729 Query 63799 CTCCATCACTTCACTAAATAGttttt--ttGTTTCTTTGTGTAGATTTGAT-ACGGCTAT 63855 || | |||| || | |||| || | || || ||||| | | ||| | | ||| || Sbjct 17728 CTGGACGACTTGGCTGA--AGTTCTTGCTAGTCTCCTTGTGCA-AGTTGCTGATGGCAAT 17672 Query 63856 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGG 63914 | || || || | |||||| || || ||| ||| || | || ||| || | |||| Sbjct 17671 ACGCGCAGCAAGGACGGCATAGTCTGGGTGTGTTGTTGT-CTTGTAGGCGGCAGTCTCGG 17613 Query 63915 CTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 | || || |||| | ||||| || || ||||| | || || || | ||| || || Sbjct 17612 CAGCAAGGTTGTCAAGCTCTACGGTGGTGACACCCTCGTAGATACCGTCGATGACTTT 17555 >seq539 Length=9559 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| ||| ||||||||||| | || | |||||||| || ||||| Sbjct 6087 CAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGA 6028 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || |||||||| || ||||| || || || || || || || || ||||| Sbjct 6027 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAG 5968 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 32819 || || ||||| ||||||||||||| || | |||| || Sbjct 5967 ATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCA 5929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633508568486400