Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq539 172 6e-38 >seq539 Length=9559 Score = 172 bits (190), Expect = 6e-38 Identities = 380/568 (67%), Gaps = 9/568 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || |||||||| || | ||| ||||| || || || | ||| ||| ||| || | Sbjct 6088 GCAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 6029 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||||||||| || || || || ||| ||| || || || Sbjct 6028 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAA 5969 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-- 93268 ||||| || ||||| ||||| || || | ||| || ||||| | || || | | Sbjct 5968 GATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCC---TTTCGGTC 5912 Query 93269 -CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 || ||||| | ||||| || || || | ||| | || | ||||||| || Sbjct 5911 GCTAATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGC 5852 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || ||| ||| | || |||| || | || || ||||| || ||||| | || ||||| Sbjct 5851 GTCAAAGAGGAATTCGCGCTGCTCGGGCTCACGGATGTAAGTGTCGATGAGAAGCGAATA 5792 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | || || |||| |||||||| || ||||| |||||||| |||| ||| || | Sbjct 5791 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGC 5732 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 ||| || || | || | ||| ||||| || || ||||| ||||||||||| || Sbjct 5731 AGCCTGAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGC 5672 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATC 93564 || || || || | | || || || || ||| | || || ||| || || Sbjct 5671 AGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTC 5612 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| || || || || || || |||| || ||| | ||||| || || || || || Sbjct 5611 CCAGTCATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGC 5552 Query 93625 TTTTTTGTACATATCCCATATGTCTTGA 93652 || |||||||| | ||| || | |||| Sbjct 5551 CTTCTTGTACATTTGCCAGATCTGTTGA 5524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556752323516160