Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq93 185 2e-41 seq17 185 2e-41 seq957 167 4e-36 seq544 140 6e-28 seq29 132 9e-26 seq539 131 3e-25 >seq93 Length=51913 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || |||||||| || |||||||| ||||| ||| Sbjct 49152 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 49093 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || ||||| | || || || || ||| Sbjct 49092 AGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGA 49033 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 49032 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 48973 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||||||||| || || || |||||||| Sbjct 48972 TCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 48926 >seq17 Length=97802 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||||||||||| |||||||| || || ||| Sbjct 47453 CCACCACGGAGGCGGAGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAG 47394 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||||| || || || ||||| Sbjct 47393 AGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCAGGTGGG 47334 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||||| || |||||||| | || || || Sbjct 47333 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACC 47274 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||||||||| || |||||||| Sbjct 47273 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 47227 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 |||||||| || || ||||| || ||||| || || | |||||||| | |||||| || Sbjct 47651 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCT 47592 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || || | || ||||| || ||||| || ||||| || |||||||| ||||| Sbjct 47591 GCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTA 47532 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| ||||||||||| | ||||| || || | ||||| || || || || | ||| Sbjct 47531 ACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTCAAAGTC 47472 Query 68445 TTGACGAATATCTGCAT 68461 |||||||| || ||||| Sbjct 47471 TTGACGAAGATTTGCAT 47455 >seq957 Length=1833 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || ||||| || |||||||| || || || Sbjct 662 CCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 721 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || || ||||| ||| Sbjct 722 AGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 781 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||||||| ||||||||||| | || || || Sbjct 782 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 841 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || || ||||| ||||| |||||||| Sbjct 842 TCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 888 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| || | ||| || || ||| || || || || ||||| || Sbjct 206 CCGCCACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGAC 265 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || ||||| || || || || || | || || ||||| || ||| Sbjct 266 AGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGA 325 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| |||||||| || || ||||| | ||||| ||| Sbjct 326 ATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACT 385 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| ||||| ||||| |||||||| || |||||||| Sbjct 386 TCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCAT 432 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 68264 CGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 |||||| || ||||||||||| ||||| ||||| || | || ||||| | |||||| || Sbjct 463 CGTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCC 522 Query 68324 GGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 || || || || | || ||||| || |||||||||||||| || || ||||| ||||| Sbjct 523 AGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 582 Query 68384 GACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGT 68443 || ||||| ||||| | || || ||||| | || ||||| || || || | ||| Sbjct 583 AACATTGTCGATAGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCGGTCAAGGT 642 Query 68444 CTTGACGAATATCTGCAT 68461 |||||| || |||||||| Sbjct 643 CTTGACAAAGATCTGCAT 660 >seq544 Length=9312 Score = 140 bits (154), Expect = 6e-28 Identities = 322/481 (67%), Gaps = 22/481 (5%) Strand=Plus/Minus Query 225524 ACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATG 225583 |||||| |||||||| |||||| ||||| ||||| ||||| || ||||| || | | | Sbjct 6827 ACGTTGACGACGTCCAAGTGGTTGGTAGGCTCGTCGAGAAGAAGAATGTCGGCCTTGAAG 6768 Query 225584 AGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATTGAA 225643 || ||||| || | || | | |||||| ||||| || ||||| || | |||| | Sbjct 6767 AGAATGGCACGGGCAAGGGCAACCTTCATCTTCCAACCACCGGAGAGACCGGCGATGGGC 6708 Query 225644 ACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGGA-----TAATGC 225695 |||| || | || ||||| |||||| || |||| |||| || | || | Sbjct 6707 ---GAGTTCTGACGGGCATCGTCGAAGCCGACTTCGTGGAGGGTCTTGACGGCCTCATCC 6651 Query 225696 GCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATATACGGTCA 225755 | || | |||| | | ||| ||||| ||| | | ||| ||||||| Sbjct 6650 --TTGGT----CATCGAGAGACG-CGT----GTCGGCGCAGATGAAGTCAAGGACGGTCA 6602 Query 225756 TGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCAT 225815 | || | || |||||| |||||| || |||||| || |||| || | Sbjct 6601 TCTCACCCTCGGAACCGTCAAGGTCGTGCTCGACGTACCAGGTTCGGACCTCTTCGGGCG 6542 Query 225816 CGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGC 225875 ||||||||||| | ||| || || | || ||||| | ||||| ||| || | | Sbjct 6541 AAGGGAAGCCCTCAACCTGACCGTTGGTGATGGCACGCATGAGGGTCGACTTACCGGAAC 6482 Query 225876 CGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCA 225935 |||| ||||| ||| ||||| | | || ||||||| |||| | || ||| | Sbjct 6481 CGTTACGACCGCAGAGACCGTATCGGTGACCACGCTTGAGACGGAGGGTGGCGGTGTTGA 6422 Query 225936 GGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCT 225995 |||| |||||| |||| ||||| || ||||||| ||| | ||| |||||||||||||||| Sbjct 6421 GGAGAATCTTGGCACCGTAGGCGAGCGAGAACTGGCAGTTGCAGAGGTCCTCACCCTCCT 6362 Query 225996 C 225996 | Sbjct 6361 C 6361 >seq29 Length=82580 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| || || ||| Sbjct 51989 CCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 52048 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || |||||||| || Sbjct 52049 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGG 52108 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 52109 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 52168 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 52169 TCAAGGGTGATGGTCTTACCTGT 52191 >seq539 Length=9559 Score = 131 bits (144), Expect = 3e-25 Identities = 361/544 (66%), Gaps = 17/544 (3%) Strand=Plus/Minus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| || |||||||||||| ||||| ||||||||| || |||||||||||||| || Sbjct 6073 GTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 6014 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCA 10372 || || |||||||| || | | ||| || |||||||| | | |||||| ||| Sbjct 6013 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGC 5954 Query 10373 CACCCAGGCGACGAGGCGCTCTGCGAAGGAG--CGGTCGCGCGAAAAGTATTTCGA-GGC 10429 | | |||| ||||| |||||||| |||| | | ||| || || || ||| Sbjct 5953 CGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCTTTCGGTCGCTAATCCAGCGGAGGGC 5894 Query 10430 CCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAGAGCTTGTTACG 10489 ||| | ||||||| ||| | ||||| || |||| || || ||||| | || Sbjct 5893 CCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCAAAGAGGAATTCGCG 5834 Query 10490 CTCGGTCTCGTCCTCA---ATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGAC 10546 || |||| |||| || || || | ||| || || || |||| ||||| Sbjct 5833 CT---GCTCGGGCTCACGGATGTAAGTGTCGATGAGAAGCGAATAGGTCTCGGAGTGGAT 5777 Query 10547 GCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCCGAGGGGTCCGTGACTTCCT 10605 | |||| | |||| || ||||||| ||| || ||| || || ||| ||| Sbjct 5776 GTTCTCCATCATGATCTGGAAACCGTAGAAGCAT-CGAGCCTCGGCAGCC-TGA--ACCT 5721 Query 10606 CGGCA---AAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGC 10662 ||| | || | | |||||||| | || || |||||| | || |||||| Sbjct 5720 CGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGCGAAGAAGG 5661 Query 10663 CGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCA 10722 |||||| ||| ||||||||| ||||| | ||||| || || | |||||| | Sbjct 5660 CGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAGTCATGAA 5601 Query 10723 CATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACA 10782 |||| | ||| | || |||||| |||||||||| | || ||||||||||||||| Sbjct 5600 GGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACA 5541 Query 10783 TCTG 10786 | || Sbjct 5540 TTTG 5537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921442867956480