Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq97 284 2e-71 seq539 259 9e-64 seq240 84.2 4e-11 >seq97 Length=50192 Score = 284 bits (314), Expect = 2e-71 Identities = 765/1158 (66%), Gaps = 44/1158 (4%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 ||||||||||| |||| || |||| | | || ||| |||||||| |||| Sbjct 19149 CCCCACATGTCGTACTGGAGTTCACCCTGGGAAGCAGGAGAGCCGGCGTAGGTCTCGTAG 19090 Query 244358 GGACCGTCGCGCTGG-GCCAGCTTACAGCTCTCG-TCGAGGGCGGCGTAGTAGATGGTCT 244415 | |||| || || | |||| || || | ||| || || ||||| | ||||||||||| Sbjct 19089 GTGCCGT-GCTCTTGAGCCAACTCGCA-CGATCGCTCAAGAGCGGCATGGTAGATGGTCT 19032 Query 244416 CGAAGATCATCTTGTTCATGTCG-CGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATC 244474 |||||||| ||||| ||| || |||| | | ||||| | ||||| ||| Sbjct 19031 CGAAGATCTGGACGTTCAA-TCGACGAGCCTCGGGCGATTCGAAGGCGTAACCCATGATC 18973 Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 |||||| | ||||| || ||||| || ||||| ||||| || | ||| ||| |||| || Sbjct 18972 ATGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGGTGACGCATGTTAGAA 18913 Query 244535 CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTG 244594 || || || || ||||| ||||| |||||| | |||||| | ||| Sbjct 18912 CGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTT------- 18860 Query 244595 ATCATGCGGACGACGTCGGCCAGCAGCTGAAAG---TCGTACTCGTAGGGATCCTCGGCG 244651 | ||| || | | ||| | | || || | ||| |||||| ||| || | Sbjct 18859 --CTTGCAGATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGTCGTAGA---CCTTGGTG 18805 Query 244652 ATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCC 244711 | | | || | || | || |||| | ||| |||||||| || || ||||| Sbjct 18804 ACAGGG-TCG--ATGAAGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCA 18748 Query 244712 TCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGG 244771 || | |||||| || ||||| ||||| | ||| ||||||||| || || ||| Sbjct 18747 TCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGG 18688 Query 244772 TGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTC 244831 | || || ||||||||| |||| |||||||||||||| |||||||| || ||| Sbjct 18687 TTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTC 18628 Query 244832 TCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCC 244891 ||| ||| | |||||| | || |||||| | | ||||||||| | |||| | Sbjct 18627 TCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACGG---TGCG---C 18574 Query 244892 TTG------CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 ||| || || |||||||| || ||| || ||| ||||| || || Sbjct 18573 TTGGAACGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAACTCCTCACCGTAGCAG 18514 Query 244946 TCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005 || | || ||||||||| ||||||||||| ||| |||||| | || ||| Sbjct 18513 TCAGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACC 18454 Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCG 245065 |||| ||||||||| ||||| | |||||| || | |||||| || | || | || Sbjct 18453 CTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCT 18394 Query 245066 TCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCC 245125 ||| || |||||| | || || | || |||||||| || |||||| ||||| Sbjct 18393 TCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCA 18334 Query 245126 ATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC 245185 ||||||| || | ||| ||||| |||||||| || |||||||| | | | || || Sbjct 18333 ATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGA----CGTAACGGGC 18278 Query 245186 G----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTT 245241 | |||||||| || || | || || || ||||| | ||||||||||| Sbjct 18277 GGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGGC 18218 Query 245242 GATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTT 245301 ||||| | ||| | || | | | | ||| || || | ||||||||| ||| Sbjct 18217 AATGTACGAGCCAGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTT 18158 Query 245302 GGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCAT 245361 |||||| | ||| ||| |||||| |||||| ||||| || || ||| |||||| Sbjct 18157 GGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCAT 18098 Query 245362 GTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGG 245421 | | || || ||||| || ||||| || | ||| ||| | |||||| || || || Sbjct 18097 GGCAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGG 18038 Query 245422 GCTGGCGTGGGTAAAGTA 245439 |||||| |||||||| Sbjct 18037 CGAGGCGTGAGTAAAGTA 18020 >seq539 Length=9559 Score = 259 bits (286), Expect = 9e-64 Identities = 457/655 (70%), Gaps = 12/655 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||||||||||||||| ||||| Sbjct 5531 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACCTC 5590 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAAAGTTTTTCCTCAAA 42416 |||||||| | |||||| || || || ||||| ||| || Sbjct 5591 TCCAAGGACCTTCATGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCC 5650 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||| || || || || || ||||| |||||||| | | | Sbjct 5651 CACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAGCGT 5710 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||| ||| ||||| || ||||||||||| |||||||| || Sbjct 5711 TTCAGTTCCGAGGTTCAGGCTGCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATG 5770 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||| ||| || | || || |||| ||||||| || |||| Sbjct 5771 GAGAACATCCACTCCGAGACCTATTCGCTTCTCATCGACACTTACATCCGTGAGCCCGAG 5830 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 |||| | || || | ||| | || || || || | ||||| ||||||| ||| Sbjct 5831 CAGCGCGAATTCCTCTTTGACGCCGTCGAAACCATCCCGGTCGTCAAGCAGAAGGCTGAC 5890 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||| ||| |||||| || | || | | | || || | ||| | || || ||||| Sbjct 5891 TGGGCCCTCCGCTGGATT-AGCGACCGAAAGGCCACCTTTGCAGAGCGTCTCGTTGCCTT 5949 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | | ||||| ||||| ||||||||||| || | |||||||| ||||||||||||||| | Sbjct 5950 TGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTTTCGCCTCTATCTTCTGGCTCAAGAA 6009 Query 42776 G-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | ||| || |||||||| ||||||||||| ||||| |||||| | | |||||||| | Sbjct 6010 GCGTGGTCTC-ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTC 6068 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-CAAGCCCTCGAAG 42893 | || | ||||| ||||||||||| ||| |||||||||| | | | |||| | | Sbjct 6069 TTCACACCGACTTCGCCTGCCTCCTCTTC---AGCCACCTCAAGAAGCGCGCCCAC-CCG 6124 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 || |||| |||||| | ||||| || || |||||||| |||||||||| Sbjct 6125 GATACCGTCCTCAAAATCATCGCCGAGGCGGTCGAAATCGAGAAAGAGTTCCTCA 6179 >seq240 Length=27542 Score = 84.2 bits (92), Expect = 4e-11 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 242948 GTTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAG 243007 ||||||||| |||||||| | || || |||||||||||||| ||||| | | | || Sbjct 14725 GTTCCCGGAGAGGACCACCGCCATTGGTCAGATGATCAACTCTTACCTCGCCCAGACCAG 14666 Query 243008 CGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA---GCCGC 243064 ||| || ||||| || | | ||||| || ||||| ||||| || |||||| | ||| Sbjct 14665 CGACCTAGACGACCAGGCGATCCACCTTCTCTTCTCCGCCAATCGCTGGGAATGCGTCGC 14606 Query 243065 CTCCGACCTGAAGCGCAAGCT-GATGAAGGGTACCACCATCGTGCTCGACCGCTACGCGT 243123 || ||| | ||| | ||| || | ||| | | |||||| |||||| ||||| | Sbjct 14605 CT-CGA--TCAAGAAGACGCTCGAAGCAGGAGA-GAGCATCGTCTGCGACCGATACGCTT 14550 Query 243124 TCTCCGGCGTAGCCT 243138 |||| || | |||| Sbjct 14549 TCTCGGGTATCGCCT 14535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944155242723840