Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq957 140 8e-28 seq17 107 5e-18 seq416 89.7 1e-12 seq383 84.2 5e-11 >seq957 Length=1833 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | || || |||||||| | |||| ||| |||||||| || || || | | Sbjct 434 CCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAG 493 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || ||||| || ||||| || ||||| || | || Sbjct 494 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 553 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| || || || || || || |||| || || || ||| Sbjct 554 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACT 613 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| ||||||| |||||||| || |||||||| Sbjct 614 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 660 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || || ||||| || ||||| | Sbjct 662 CCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 721 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | || ||||| ||||| || |||||||| ||| || Sbjct 722 AGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 781 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || || || ||||| || || | ||| || || || Sbjct 782 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 841 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 842 TCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 888 >seq17 Length=97802 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || || || || ||||||| || || || || ||| Sbjct 47666 AGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCT 47607 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || ||||| ||||| || ||||| || | || || || || |||||| Sbjct 47606 TCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCC 47547 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || || || || || ||||| || || | || ||||| || || || ||||| ||| Sbjct 47546 TGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTC 47487 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||| |||||||||||| || ||||| Sbjct 47486 TTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 47455 >seq416 Length=16633 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/142 (77%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 207839 GAGCTTGGCTGCGGATCGCCCATA-TATC-TCTGTGAA-TTTTTACCGTACACGAGTTC- 207894 |||||||||||||||| |||||| || | ||| | || |||||||| ||| | | || Sbjct 16375 GAGCTTGGCTGCGGATTGCCCATTGTAACATCTTTCAAGTTTTTACCATACCCAGGGTCA 16434 Query 207895 TGCTCTCGTCCATC-ATAATGTTTCCACGATGATTTGGTATCACAAGCTTTAGGGGGTTC 207953 | |||| ||| | | ||||||||| | | ||||||| ||||||||||| || | Sbjct 16435 TTAACTCGGCCACCGACTATGTTTCCATGTCGGCTTGGTATTGAAAGCTTTAGGGTGTCC 16494 Query 207954 CCGCAATTTGACAGTGTCGCAA 207975 ||||||||||| |||||||||| Sbjct 16495 CCGCAATTTGATAGTGTCGCAA 16516 >seq383 Length=18078 Score = 84.2 bits (92), Expect = 5e-11 Identities = 286/431 (66%), Gaps = 16/431 (4%) Strand=Plus/Plus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 325401 ||| |||||||| |||| | | |||||| || ||| ||| | | |||||| ||| Sbjct 14943 ATCTTTACCACCGAGCAAACGAGTACCGAATTGACCCCTAGGCTCGAGCAAGTTGACGTT 15002 Query 325402 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCC 325461 ||||| ||||| | | ||| || || |||||||||| || || ||| || Sbjct 15003 GTTGCTACCGACGAAGTTCTGCGCGAGACCCACGATGGTCATGGTAAGCGACTGTTCACC 15062 Query 325462 ATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGT 325521 ||||| || || | | | |||| |||| || ||| || ||||| | || Sbjct 15063 GTGGTGGTAAGCAGTGGTACCGGAGACGTGACCGACGAGCTGAGCGACCTTGATCTCAC- 15121 Query 325522 CGTCAAA-TTGCGCTTGAAAG--CTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 325578 ||||| ||||| ||||| | | ||| || | ||||| ||||| || |||| ||| Sbjct 15122 CGTCACCCTTGCGGTTGAAGGTACCGAAGATGAC-CTTTC-GTTGACCTGGCTTGAGACC 15179 Query 325579 ATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTT 325638 ||| ||| | ||||| || || ||| | |||||| | ||| || ||||| Sbjct 15180 ATCGACGGCGGACGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAGAATGAGCTCCTT 15239 Query 325639 GTCGATGAAGTCGGGAACGGGAA-CCTCGGGCTTCTTGTGGTCAAGTTGATTTCCTGGTT 325697 || |||||| |||| | |||| ||| | | |||||||| || | |||| ||| Sbjct 15240 GTTGATGAAATCGGCATAAGGAATCCTATCGATG-TTGTGGTCGAGGTAGGTTCCAGGT- 15297 Query 325698 CGTATGCCGTC--ATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAAAGAACGG 325753 || | | ||| | ||||||||| || || || || || | ||||||||||| | | Sbjct 15298 CGAAA-CTGTCGGAGCCACTCCTTTCGGTCATCCGCCTTCTT--CTTGTTGAAAGCAAGA 15354 Query 325754 TCAATGAGCTC 325764 ||||||||||| Sbjct 15355 TCAATGAGCTC 15365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179418858405952