Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq383 100 6e-16 seq416 89.7 1e-12 >seq383 Length=18078 Score = 100 bits (110), Expect = 6e-16 Identities = 478/743 (64%), Gaps = 30/743 (4%) Strand=Plus/Plus Query 297158 TCTTCGATCTTACCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGATCTTCTCCA 297217 || ||||| | ||| |||| || || ||||| |||||||| || | || || ||| Sbjct 14638 TCCTCGATGTCACCGGTGAAGCCACGGTACCATGGTTTCATCGGAACAATGTCCTCACCA 14697 Query 297218 GCAATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTC 297277 || || ||| || |||| | || || || | || ||||| | |||| || Sbjct 14698 GCCATGCGTCGTCGCAAGTTGGCGACAATCTCGTGAGGGTTGTAGTTGGGGACGAAGGTG 14757 Query 297278 GACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACA 297337 ||||||||||||||||| || | ||| || | || | || | ||||||| Sbjct 14758 GACCAACCGGTACCGATACCTTCAGCACCGTTGAGTAGCACCTGTGGCACCACAGGCATG 14817 Query 297338 TAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGA---TTATCG 297394 || ||| || ||||| | | ||| ||||||| ||| |||| || | | | |||| Sbjct 14818 TACCACTGAGGCTCGATGCTCTGACCATCATCATCCAGGTATTCGAGCAAAGCGTCATCG 14877 Query 297395 TCCGTATCGACGAAAACCTGTCGAGTCTGA----GGGTTCAGTTTTGTGAAAATATATCG 297450 | | | || || | || || ||| ||| ||| ||||| ||||| | Sbjct 14878 TTCTGAGGGAAGAG-----GGCGCGTGTGATCTTGGG--CAGCGCGGTGAAGATATACCT 14930 Query 297451 TGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAA 297510 || || ||| |||||||| |||| | | |||||| || ||| ||| | Sbjct 14931 GGCCGAGGCAGCATCTTTACCACCGAGCAAACGAGTACCGAATTGACCCCTAGGCTCGAG 14990 Query 297511 CCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAG 297570 | |||||| ||| ||||| ||||| | | ||| || || |||||||||| || Sbjct 14991 CAAGTTGACGTTGTTGCTACCGACGAAGTTCTGCGCGAGACCCACGATGGTCATGGTAAG 15050 Query 297571 AGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAAC 297630 || ||| || ||||| || || | | | |||| |||| || ||| || || Sbjct 15051 CGACTGTTCACCGTGGTGGTAAGCAGTGGTACCGGAGACGTGACCGACGAGCTGAGCGAC 15110 Query 297631 CTTCACGTCGGTCGTCAAA-TTGCGCTTGAAAG--CTGAATATATCACTTTCCGTTGAGA 297687 ||| | || ||||| ||||| ||||| | | ||| || | ||||| ||||| Sbjct 15111 CTTGATCTCAC-CGTCACCCTTGCGGTTGAAGGTACCGAAGATGAC-CTTTC-GTTGACC 15167 Query 297688 AGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAA 297747 || |||| |||||| ||| | ||||| || || ||| | |||||| | Sbjct 15168 TGGCTTGAGACCATCGACGGCGGACGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAG 15227 Query 297748 AATAAGTTCCTTGTCGATGAAGTCGGGAACGGGAA-CCTCGGGCTTCTTGTGGTCAAGTT 297806 ||| || ||||||| |||||| |||| | |||| ||| | | |||||||| || | Sbjct 15228 AATGAGCTCCTTGTTGATGAAATCGGCATAAGGAATCCTATCGATG-TTGTGGTCGAGGT 15286 Query 297807 GATTTCCTGGTTCGTATGCCGTC--ATCCACTCCTTGCGATCCTCGGC--TCGTGACTTG 297862 |||| ||| || | | ||| | ||||||||| || || || || || | |||| Sbjct 15287 AGGTTCCAGGT-CGAAA-CTGTCGGAGCCACTCCTTTCGGTCATCCGCCTTCTT--CTTG 15342 Query 297863 TTGAAAGAACGGTCAATGAGCTC 297885 ||||||| | | ||||||||||| Sbjct 15343 TTGAAAGCAAGATCAATGAGCTC 15365 >seq416 Length=16633 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/142 (77%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 183641 GAGCTTGGCTGCGGATCGCCCATA-TATC-TCTGTGAA-TTTTTACCGTACACGAGTTC- 183696 |||||||||||||||| |||||| || | ||| | || |||||||| ||| | | || Sbjct 16375 GAGCTTGGCTGCGGATTGCCCATTGTAACATCTTTCAAGTTTTTACCATACCCAGGGTCA 16434 Query 183697 TGCTCTCGTCCATC-ATAATGTTTCCACGATGATTTGGTATCACAAGCTTTAGGGGGTTC 183755 | |||| ||| | | ||||||||| | | ||||||| ||||||||||| || | Sbjct 16435 TTAACTCGGCCACCGACTATGTTTCCATGTCGGCTTGGTATTGAAAGCTTTAGGGTGTCC 16494 Query 183756 CCGCAATTTGACAGTGTCGCAA 183777 ||||||||||| |||||||||| Sbjct 16495 CCGCAATTTGATAGTGTCGCAA 16516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102659787950400