Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq97 215 6e-51 seq383 149 7e-31 seq539 131 2e-25 >seq97 Length=50192 Score = 215 bits (238), Expect = 6e-51 Identities = 921/1428 (64%), Gaps = 47/1428 (3%) Strand=Plus/Minus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTC 113973 || ||||| |||||| || | ||| ||||| |||| ||||| ||||| || || || Sbjct 19335 AATTCACCAGCGAGGACACGACG-AGAGTAGATGTTGGAGGTGTAGGGCTCGAAACATTC 19277 Query 113974 ATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||| ||||||||| || || || || || |||||||| || | | || ||| Sbjct 19276 GTTGAAACCCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTT 19217 Query 114034 ACGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG---TTG-- 114085 |||||||| ||| | | || |||||||| ||||||| | | | Sbjct 19216 GCGGAGACCGTGCTTGGCGATCTTGG---CCTTGAGGCTAGCCCAGTCCCAAAGATCGGA 19160 Query 114086 AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCC 114145 || || | |||| |||| || ||||||| ||| ||||| || || || || Sbjct 19159 AGGAGTGACACCCC-----ACATGTCGTACTGGAGTTCACCCTGGGAAGCAGGAGAGCCG 19105 Query 114146 TCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGC 114204 | | |||||||| | ||| | | | ||||| ||| | | |||| || || || || Sbjct 19104 GCGTAGGTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCGC-TCAAGAGCGGC 19046 Query 114205 GTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGC 114264 || || || ||||| || || | | |||| | |||||| || || || || Sbjct 19045 ATGGTAGATGGTCTCGAAGATCTGGACGTTCAATCGACGAGCCTCGGGCGATTCGAAGGC 18986 Query 114265 GAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATG 114324 | | | || || |||| || ||||| || ||||||| || || ||||| || Sbjct 18985 GTAACCCATGATCATGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGGTG 18926 Query 114325 TCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATT 114384 | ||| ||||| ||||| ||| || || || | || | ||||| | | | || Sbjct 18925 ACGCATGTTAGAACGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTT 18866 Query 114385 TAGATTTTTGGTGACAACCTTTGTGATTTCATGAA---GCTTTTCGTAATCAAAACTGCG 114441 | || ||| || | |||| | | || || | |||| | || | | | || | Sbjct 18865 CAAGTTCTTGCAGATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGTCGT-AGACCTTGG 18807 Query 114442 AGTCTCT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCT 114500 | | || ||| | | ||||| ||||| || || || || || |||| || Sbjct 18806 TGACAGGGTCGATGA---AGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCT 18750 Query 114501 CATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCA 114560 |||| | || ||||||| || || || || ||||| || || | ||| || || || | Sbjct 18749 CATCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGA 18690 Query 114561 AGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCG 114620 |||||| || || ||||| ||| || |||||||| || ||| | || | || | Sbjct 18689 GGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAG 18630 Query 114621 TCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTG 114679 |||| || || |||| ||| || || | ||||| | || | | || | || ||| ||| Sbjct 18629 TCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG-ACGGTGCGCTTG 18571 Query 114680 GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCT 114739 | || || || ||||||| |||||| |||||||| ||||| | || Sbjct 18570 GAACGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAACTCCTCACCGTAGCAGTCA 18511 Query 114740 GAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGC 114799 | ||| || || || | ||||| | ||| ||||||| || || |||||| | | Sbjct 18510 GCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTC 18451 Query 114800 TTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCA 114859 ||||||||||| || || | ||||||||| ||||||| || || ||| ||||||| Sbjct 18450 TTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCC 18391 Query 114860 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 114919 | || || || ||||| || | || || | || ||||| |||||| || || | | Sbjct 18390 TTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATG 18331 Query 114920 TACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCA 114976 || | || | | || ||| |||| |||||| || || | || ||| Sbjct 18330 TAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTG 18271 Query 114977 TTAAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCGAA--T 115032 || || || |||||||| |||| |||||| | | || || || || || || | Sbjct 18270 TTGAAGACACGAAGCATGGGAACGATACCGTTGCTGA--CACCGTTGGTGCCGGCAATGT 18213 Query 115033 ACGAGACTTATTGGCTCTGACATCA-TGGATGTGCATACCAATACCCCCTGCCCACTTTG 115091 ||||| | | | ||| || || || |||| || |||||| || || || ||| | Sbjct 18212 ACGAGCC--AGTACCTC-GAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGG 18156 Query 115092 AGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTG 115151 |||| || || | |||| || |||| || || |||||||||||| |||| | | Sbjct 18155 AGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGG 18096 Query 115152 CGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTG 115211 | | |||||| ||| ||| | || || || || |||||||||||||||||||| | Sbjct 18095 CAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCG 18036 Query 115212 TCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCA-AGACGGCGGGAAT 115269 |||| || || ||| ||| ||||| | ||| ||||| | || | | || Sbjct 18035 AGGCGT-GAGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCG-AT 17978 Query 115270 GTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 ||| | ||||||||||| | | ||| ||||| | ||||| ||||| Sbjct 17977 GTCCTGGCCGTGAATACCAACAGCGACACGCATGAGCATGTGCTGGGG 17930 >seq383 Length=18078 Score = 149 bits (164), Expect = 7e-31 Identities = 292/425 (69%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || ||||| |||||| || || | || | |||||||||||| || || || Sbjct 15609 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGCGA 15668 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 172694 |||||||| |||| ||| ||||| ||||| | | || || || ||||| | ||| | Sbjct 15669 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTAACGT 15727 Query 172695 CTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 172754 | |||| | || || ||||| ||||| | |||| ||||| | |||| |||| || Sbjct 15728 CGAGATATTGTTTGCCGTGTTGCAGACCGAGAATCTCCTTGATGGCTTTGATCTCTGCGT 15787 Query 172755 TTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGA 172814 | ||| || | | ||| || || || || | ||| || ||||| |||| Sbjct 15788 TCTTCATGATCTGATCGTGAGTAGCCTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGA 15847 Query 172815 ACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGG 172874 | |||||||||| |||||||| || || |||||| ||||| ||||| | ||| || | Sbjct 15848 AGACACCGTAGTTGTCACGACCCACTTCAACAAGACCGGCAACAGCGAGAGCCTTGGCTG 15907 Query 172875 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTTGTTC 172933 | ||||| || || | ||||| ||||| | || || | | | | || || ||||| Sbjct 15908 AGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTT-TCCTGCCACCTGCATTGTTG 15966 Query 172934 GCATCGTCCAACTTGGGAATACCAGTAATTTTGG---ACTTGCGGGCACCATCTGTCTTC 172990 ||||| || | |||||| || || || ||| |||| | ||| || |||||| Sbjct 15967 GCATCTTCGAGCTTGGGGATGTTGGTGATCCTGGTACGCTTGTG---ACCGTCGGTCTTC 16023 Query 172991 TTGAG 172995 ||||| Sbjct 16024 TTGAG 16028 >seq539 Length=9559 Score = 131 bits (144), Expect = 2e-25 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| ||||||||||| ||||||||||| || || |||||| || || ||||||||||| Sbjct 6073 GTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 6014 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | || ||||| ||||||||||| ||||| || Sbjct 6013 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGC 5954 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAACCACTTCAT 126234 ||| || |||| ||||||||| ||||||| | | |||| ||| || ||| | Sbjct 5953 CGCAAAGGCAACGAGACGCTCTGCAAAGGTG---GCCTTTCGGTCGCTAATCCAGCGGAG 5897 Query 126235 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 ||||| | ||||| | || || ||||| ||| | || || |||||||| Sbjct 5896 GGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCAAAGAG 5843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597237235518720