Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq957 123 3e-23 seq17 116 4e-21 seq29 93.3 5e-14 >seq957 Length=1833 Score = 123 bits (136), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | | |||||| || | || | || |||||||| |||||||||||||||| Sbjct 204 GACCGCCACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAG 263 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 |||||| || | || || | ||| |||||||| || || | |||||||||||| | | Sbjct 264 ACAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAG 323 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCC 42158 | | | ||||||||| ||| | || | |||| | | | |||||| ||||| Sbjct 324 GAATACCTTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCG 382 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| || || || |||||||| |||||||| ||||| Sbjct 383 ACTTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCAT 432 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| || |||| || | |||||| ||| |||||||| || |||||||| | Sbjct 433 ACCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGA 492 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || |||||||| ||||| || || || ||||||||||| | || Sbjct 493 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGGGG 552 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| ||| ||| || || | | | | ||||| || || || Sbjct 553 AATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGAC 612 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || ||||| ||||| || | ||||| |||||||| ||||| Sbjct 613 TTCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 660 >seq17 Length=97802 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || | ||||| || | || || ||||||||||||||||| Sbjct 47418 CTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAA 47359 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 |||||||||||||| || | ||| | || ||||||||| ||| || |||| ||| Sbjct 47358 GATGAGTCGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 47300 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || |||| |||||||| ||||| || || ||||| | Sbjct 47299 TGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 47240 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 47239 CAAAGATCTGCAT 47227 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 |||||| ||| |||||| ||||| ||||| || | || || || | || || ||||| Sbjct 47658 ATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTG 47599 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || || || || || ||||||||||| | || | | |||||| ||| ||| | | Sbjct 47598 CTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCC-TGAATCT 47540 Query 42125 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 | | | | ||| | | | ||||| ||||| || || | ||||| || ||||| | Sbjct 47539 TGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGG 47480 Query 42184 TTAGCGTCTTTACAAAGATTTGCAT 42208 | | ||||| || ||||||||||| Sbjct 47479 TCAAAGTCTTGACGAAGATTTGCAT 47455 >seq29 Length=82580 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 52024 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 52083 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | | |||||||||| ||| || |||| ||| Sbjct 52084 GATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 52142 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 | | | |||||| || ||||| || | |||||||| || || ||| Sbjct 52143 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGTT 52192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543106982146560