Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq97 289 3e-73 >seq97 Length=50192 Score = 289 bits (320), Expect = 3e-73 Identities = 1162/1817 (64%), Gaps = 38/1817 (2%) Strand=Plus/Plus Query 93732 CTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACC 93791 |||||| ||||| ||| || ||| | ||| || | |||| |||| | ||||| || Sbjct 17872 CTTCAAGACTCTCGAGCGTTCCTACTTGCTCCGCATCAACGGCAAGGTTGCTGAGCGTCC 17931 Query 93792 GCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAATGTTTT 93851 || || |||| ||||| ||||| | || ||||||||||| ||||| || || | | Sbjct 17932 CCAGCACATGCTCATGCGTGTCGCTGTTGGTATTCACGGCCAGGACATCGAGAGTGCTAT 17991 Query 93852 GCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACCCTGTTCAA 93911 | ||| || |||| | | ||| | ||| ||| | || ||||| ||||| Sbjct 17992 CGAGACTTACAACCTCATGTCGCAAAAGTACTTTACTCACGCCTCGCCAACCCTCTTCAA 18051 Query 93912 CGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTC 93971 ||| || || || || ||| | || || |||||||| | | | |||| ||||| Sbjct 18052 CGCTGGCACTCCCCATCCTCAGCTCTCGTCCTGTTTCCTTGTTGCCATGAAGGATGACTC 18111 Query 93972 CATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGG 94031 ||| || |||| ||||| ||||||| |||||| | ||||| || ||| || || Sbjct 18112 GATCGATGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGCGG 18171 Query 94032 AATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGG 94091 || || | | | ||| | | || | | || || ||||| ||| ||||| || Sbjct 18172 CATTGGTTTGAACATTCACTGCATTCGAGGTACTGGCTCGTACATTGCCGGCACCAACGG 18231 Query 94092 CACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGA 94151 | |||||| |||| || ||||| || |||||||||||| | || || ||||| || Sbjct 18232 TGTCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTTACGTCGA 18291 Query 94152 CCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGA 94211 |||||||||| | | | ||| | || || |||| | ||||| |||||| |||| Sbjct 18292 CCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGA 18351 Query 94212 CGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGA 94271 || | ||| ||||| |||| ||||||||||| || || | | ||| | || Sbjct 18352 TGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTCGTGCCCGTGA 18411 Query 94272 CCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGC 94331 |||||||||||||||||||| || || || || ||||| | || ||| | ||| || Sbjct 18412 ACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAGCAGAACGGCGA 18471 Query 94332 CTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTT 94391 ||| || | || ||||| || || ||||| || | ||| | || | || Sbjct 18472 ATGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCTGACTGCTACGGTGAGGAGTT 18531 Query 94392 TGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA---GGAAGGTTATGGATGC 94448 ||| | || | |||||||| | | || ||| | | || | | || Sbjct 18532 TGAGCGTCTCTACGAGCGTTACGAGGCTGAAGGTCGTTCCAAGCGCACCGTCA---AGGC 18588 Query 94449 TAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTT 94508 | |||||| ||| | ||| | || ||| ||||| |||| |||| |||| | Sbjct 18589 TCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACCCCTTCATCCT 18648 Query 94509 GTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTC 94568 | ||||||| ||| |||| ||||||||||||| || ||||||| |||||| |||| Sbjct 18649 CTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACTATCAAGTGCTC 18708 Query 94569 GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCT 94628 || ||||||| ||||| ||||||| | | |||| || ||| ||||||| || ||||| Sbjct 18709 CAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAGGTTGCTGTTTGCAACCT 18768 Query 94629 GGGCTCCATCAACCTGTCCACTTTCGTGCGA-GATGCCTAC-ACGTCTACTGCTTCGTTC 94686 | ||||||| || |||| ||| | ||| || | | | |||||| || | | Sbjct 18769 TGCCTCCATCGCTCTTCCCACCTTCAT-CGACCCTGTCACCAAGGTCTACGACTACAAGC 18827 Query 94687 GATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATC 94746 | | || | ||| ||| || || || | |||| |||||| | | ||| Sbjct 18828 G-TTTGCACGAGGTTGCCAA------GG---CTATCTGCAAGAACTTGAACAAGATCATC 18877 Query 94747 GACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATC 94806 |||| |||| |||||| || |||||| || ||| || || || || ||| Sbjct 18878 GACATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACATGCGTCACCGCCCTATC 18937 Query 94807 GGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCT 94866 || ||||| || |||||| | || || || | |||| ||| || ||| ||| || Sbjct 18938 GGTATCGGTGTTCAGGGTCTTGCCGATGCCTTCATGATCATGGGTTACGCCTTCGAATCG 18997 Query 94867 GTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGAAA 94926 ||| || | ||||| | | || ||||| | ||| || | | || | | Sbjct 18998 CCCGAGGCTCGTCGATTGAACGTCCAGATCTTCGAGACCATCTACCATGCCGCTCTTGAG 19057 Query 94927 CAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCC- 94985 | ||| | | ||||| | | ||||| | |||| | | | ||| || || Sbjct 19058 CGATCGTGCGAGTTGGCTCAAGAGCACGGC---ACCTACGAGACCTACGCCGGCTCTCCT 19114 Query 94986 -CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACG 95044 ||| ||||| | |||| |||| | |||||||| | || || | ||| | | Sbjct 19115 GCTT--CCCAGGGTGAACTCCAGTACGACATGTGGGGTGTCACTCCTTCCGATCTTTGGG 19172 Query 95045 ACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTG- 95101 |||||| | ||| | || || | ||| |||||| | ||| |||| |||| Sbjct 19173 ACTGGGCTAGCCTCAAGGCCAAGA--TCGCCAAGCACGGTCTCCGCAACTCGCT-CTTGC 19229 Query 95102 TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAAC 95161 | || |||||||| || || || || |||||| | || |||||| | ||||| | Sbjct 19230 TCGCTCCCATGCCTACCGCATCTACAAGTCAGATCTTGGGTTTCAACGAATGTTTCGAGC 19289 Query 95162 CCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACA 95221 ||| |||||||||| | ||| | || || ||||| || ||||||| ||| ||||| Sbjct 19290 CCTACACCTCCAACATCTACTCTCGTCGTGTCCTCGCTGGTGAATTCCAGGTCGTCAACC 19349 Query 95222 AGCACCTCCTACGGGACCTGACGT--CTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA 95279 | || || || || ||| | ||| ||||| |||| | ||||||| Sbjct 19350 CTTGGTTGCTCCGCGAACT--CGTTGAGCAGGGATTGTGGAACGACACAATGAAGAACCG 19407 Query 95280 ACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGG 95338 | | ||| | | || ||| |||||||| | || || || || |||||| Sbjct 19408 TAT-CATCGCTCACGGTGGTTCCATCCAGAACGTTCCTGGTATCCCCGACCGTATCAAGA 19466 Query 95339 CGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCC 95398 |||||||||||| || ||||||||| | ||| | || ||||| || || | || Sbjct 19467 AGCTCTACAAGACTGTTTGGGAGATCTCCCAGAAGGCTATCATCGACATGGCCGCTGACC 19526 Query 95399 GCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCGCG 95458 | || | ||||| |||||| || | | |||| | || Sbjct 19527 GAGGTGCTTTCATTTGCCAGTCTCAATCGCTCAACATCCACTTGTCGGCTCCCACTTTCG 19586 Query 95459 GAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATT 95518 | | | || || ||| |||||||| |||| ||||||||||||||||||| || | Sbjct 19587 GTCAGTTGACTTCGATGCACTTCTACGGTTGGAAGAAGGGTCTCAAGACCGGTACCTACT 19646 Query 95519 ATTTGCGAACCAGGCCA 95535 | | || |||| |||| Sbjct 19647 ACCTTCGTACCAAGCCA 19663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494626827920640