Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq97 136 4e-27 seq957 107 2e-18 seq29 86.0 6e-12 seq17 84.2 2e-11 >seq97 Length=50192 Score = 136 bits (150), Expect = 4e-27 Identities = 422/645 (65%), Gaps = 15/645 (2%) Strand=Plus/Minus Query 153821 CTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACA 153880 |||||| |||||||| || ||||||||||| || ||||||||||| ||||| ||||| || Sbjct 18556 CTCGTAACGCTCGTAGAGACGCTCAAACTCCTCACCGTAGCAGTCAGCGAGACCGGGGCA 18497 Query 153881 CTGATGCGGACACATCAGCGACCACATATCG-TCGGCGTTGACGCGTCGCATGAACAGAT 153939 || | || ||||| |||||||| || || || | || | |||||| |||| Sbjct 18496 CTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGC-TCAACCCTCTTCATGAAGAGAT 18438 Query 153940 CCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATG---- 153995 | || |||||||| ||||| | ||| || || | | | | | || | || || Sbjct 18437 CGGGAACCCAGAGAGCGTAGAAGAGTTCACG-GGCACGAACTTCTTCCTTACCGTGGTTC 18379 Query 153996 TTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCC 154055 ||||| || | ||| | | ||| || | |||||| || |||||||||| ||| Sbjct 18378 TTGCG---CAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCA 18322 Query 154056 AGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACG 154112 | |||||| |||| || || ||||| ||||||| || | | ||||||||||| Sbjct 18321 AAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACA 18262 Query 154113 CGCACCATGGGTTCCAGGCCGCTTGC-GGTGCCGTTGGTCGAATTGATCTTGCTGCCGCG 154171 || | |||||| | | ||| |||| | |||||||| || | ||| Sbjct 18261 CGAAGCATGGGAACGATACCG-TTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGT 18203 Query 154172 GGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA 154231 | || | || | ||| | |||||||||||| || ||| || || || || Sbjct 18202 ACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACA 18143 Query 154232 GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACA 154291 | || || ||| ||||| ||||| || || | | | | | |||||| Sbjct 18142 GGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACA 18083 Query 154292 CGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAA 154351 || | | || ||| | | || || || |||||||| || ||||| ||||| Sbjct 18082 GGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAA 18023 Query 154352 CAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAAT 154411 ||||| ||| | | ||| || ||||| || ||||| || | ||||||||| Sbjct 18022 GTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAAT 17963 Query 154412 GCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 || | ||||| ||||||||||||||||| ||||| || || || Sbjct 17962 ACCAACAGCGACACGCATGAGCATGTGCTGGGGACGCTCAGCAAC 17918 >seq957 Length=1833 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | || | | | |||||||| || ||||||||||| Sbjct 662 CCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 721 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| | || |||||||| || || ||||| Sbjct 722 AGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 781 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | |||| | | |||||||| ||||||| Sbjct 782 ATACCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGT-CGATGGTGTCGGAAGACTCCA 839 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | || ||||| |||||||| ||||| || ||||||||| Sbjct 840 CCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATG 889 >seq29 Length=82580 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || ||||||| Sbjct 52022 GACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCG 52081 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 52082 AAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACG 52141 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | || | |||||||| ||||||||||| | || | || ||||| || Sbjct 52142 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGT 52191 >seq17 Length=97802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | | |||||||| ||||||||||||||| Sbjct 47681 CCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 47622 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || || || | | |||| || ||||| ||||| || || Sbjct 47621 AGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 47562 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| | || | |||| ||| || | |||||| | || || | Sbjct 47561 ATACCCTCCTTATC-CTGAATCTTGGCCTTAACGTTG-TCGATGGTGTCAGAGGATTCGA 47504 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || |||| ||| || || || || ||||| Sbjct 47503 CCTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 47455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496165728084480