Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq957 111 1e-19 seq93 86.0 6e-12 >seq957 Length=1833 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| ||| |||||||||||||| || ||||| || |||| || || Sbjct 452 ACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGTTCGGCCGTCTTCG 511 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | || | || |||||||| || ||||||||||| ||||| || Sbjct 512 AGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 571 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | || | ||||| || ||||||||||||||||||| || ||| Sbjct 572 ATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTG 631 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || || ||||| || ||||| Sbjct 632 CCGGTCAAGGTCTTGACAAAGATCTGCAT 660 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || ||||| ||||| || || || Sbjct 659 ATACCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 718 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| || | || ||||| ||| | || | || ||||| || || Sbjct 719 GAAAGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGA 778 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || ||||| || |||| || | || | ||||||||||||||| Sbjct 779 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAAGACTC 837 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || ||||| ||||| ||||| || || ||||| Sbjct 838 CACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 888 >seq93 Length=51913 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || ||||| || ||| | ||| || Sbjct 49134 ACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCG 49075 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | || | || ||||| || || ||||||||||| || || || Sbjct 49074 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 49015 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | |||||| ||||||||||| ||||| || | || || Sbjct 49014 ATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTA 48955 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| ||||| || |||||| Sbjct 48954 CCCGTGAGGGTTTTAACAAAGATCTGCATC 48925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451915149776640