Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq97 215 6e-51 seq383 161 1e-34 seq539 125 9e-24 seq3632 82.4 9e-11 >seq97 Length=50192 Score = 215 bits (238), Expect = 6e-51 Identities = 918/1427 (64%), Gaps = 45/1427 (3%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 || ||||| |||||| || | ||| |||||||||| ||||| ||||| || || || Sbjct 19335 AATTCACCAGCGAGGACACGACG-AGAGTAGATGTTGGAGGTGTAGGGCTCGAAACATTC 19277 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||| ||||||||| || ||| || || || |||||||| || | | || ||| Sbjct 19276 GTTGAAACCCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTT 19217 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG---TTG--AGC 116049 ||||||||| | || |||||||| ||||||| | | | || Sbjct 19216 GCGGAGACCGTGCTTGGCGATCTTGGCCTTGAGGCTAGCCCAGTCCCAAAGATCGGAAGG 19157 Query 116050 TTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCA 116109 || | |||| |||| || ||||||| ||| ||||| || || || || | Sbjct 19156 AGTGACACCCC-----ACATGTCGTACTGGAGTTCACCCTGGGAAGCAGGAGAGCCGGCG 19102 Query 116110 AATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTG 116168 | ||||| || | ||| | | | ||||| ||| | | |||| || || || || || Sbjct 19101 TAGGTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCGC-TCAAGAGCGGCATG 19043 Query 116169 ATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAG 116228 || || ||||| || || | | |||| | |||||| || || || ||| Sbjct 19042 GTAGATGGTCTCGAAGATCTGGACGTTCAATCGACGAGCCTCGGGCGATTCGAAGGCGTA 18983 Query 116229 ACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288 || | || || |||| || ||||| || ||||||| || || ||||| || | Sbjct 18982 ACCCATGATCATGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGGTGACG 18923 Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 ||| ||||| ||||| ||| || || || | || | ||||| | | | || | Sbjct 18922 CATGTTAGAACGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAA 18863 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAA---GCTTTTCGTAATCAAAACTGCGAGT 116405 || ||| || | |||| | | || || | |||| | || | | | || | | Sbjct 18862 GTTCTTGCAGATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGTCGT-AGACCTTGGTGA 18804 Query 116406 CTCT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCAT 116464 | || ||| | | ||||| ||||| || || || || || |||| ||||| Sbjct 18803 CAGGGTCGATGA---AGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCAT 18747 Query 116465 CCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGT 116524 | | || ||||||| || || || || ||||| || || | ||| || || || | || Sbjct 18746 CGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGT 18687 Query 116525 TCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCT 116584 |||| || || ||||| ||| || ||||||||||| || | || | || |||| Sbjct 18686 TCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCT 18627 Query 116585 CCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCT 116643 | || || |||| ||| || || | ||| | | || | | || | || ||| |||| Sbjct 18626 CGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG-ACGGTGCGCTTGGAA 18568 Query 116644 CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGA 116702 || || || ||||||| |||||| ||||||||| ||| || ||| || | Sbjct 18567 CGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAACTCCTCA-CCGTAGCAGTCAGC 18509 Query 116703 GAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 116762 ||| || || || | || || | ||| ||||||| || || |||||||| ||| Sbjct 18508 GAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTT 18449 Query 116763 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 116822 ||||||||| || || | |||||| || ||||||| || || ||| ||||||| | Sbjct 18448 CATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTT 18389 Query 116823 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882 || || || ||||| || | || || | || ||||| |||||| || || | ||| Sbjct 18388 ACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTA 18329 Query 116883 CACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGC 116936 | || | | || | |||| |||| |||||| || || | || || Sbjct 18328 GATGGCAAAGGCACC---GGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTT 18272 Query 116937 GTTAAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCGAA-- 116992 ||| || || |||||||| |||| |||||| | | || || || || || || Sbjct 18271 GTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGA--CACCGTTGGTGCCGGCAATG 18214 Query 116993 TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTG 117052 |||||| | | ||| | ||| |||| || |||||| || || || ||| | Sbjct 18213 TACGAGCC--AGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGG 18156 Query 117053 AGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTG 117112 |||| || || | |||| || |||| || ||||||||||||||| |||| | | Sbjct 18155 AGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGG 18096 Query 117113 CGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTG 117172 | | ||||| ||| ||| | || || || || |||||||||||||||||||| | Sbjct 18095 CAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCG 18036 Query 117173 TCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATG 117231 |||| || || ||| ||| ||||| | ||| ||||| | || ||| Sbjct 18035 AGGCGT-GAGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATG 17977 Query 117232 TCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 || | ||||||||||| | | ||| ||||| | ||||| ||||| Sbjct 17976 TCCTGGCCGTGAATACCAACAGCGACACGCATGAGCATGTGCTGGGG 17930 >seq383 Length=18078 Score = 161 bits (178), Expect = 1e-34 Identities = 267/380 (70%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || ||||| |||||| || || | |||| |||||||||||| || || || Sbjct 15609 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGCGA 15668 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACAT 176714 |||||||| |||| ||| ||||| ||||||| | || || || ||||| | ||| | Sbjct 15669 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTAACGT 15727 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | |||| | || || ||||| ||||| | ||||| ||||| | |||| |||| || Sbjct 15728 CGAGATATTGTTTGCCGTGTTGCAGACCGAGAATCTCCTTGATGGCTTTGATCTCTGCGT 15787 Query 176775 TTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGA 176834 | ||| || | | ||| || || || || | ||| |||||||| |||| Sbjct 15788 TCTTCATGATCTGATCGTGAGTAGCCTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGA 15847 Query 176835 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 176894 | |||||||||| |||||||| || || ||||| ||||| ||||| | ||| || | Sbjct 15848 AGACACCGTAGTTGTCACGACCCACTTCAACAAGACCGGCAACAGCGAGAGCCTTGGCTG 15907 Query 176895 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTTGTTC 176953 | ||||| || || | ||||| ||||| | || || | | | | || || ||||| Sbjct 15908 AGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTT-TCCTGCCACCTGCATTGTTG 15966 Query 176954 GCATCGTCCAACTTGGGAAT 176973 ||||| || | |||||| || Sbjct 15967 GCATCTTCGAGCTTGGGGAT 15986 >seq539 Length=9559 Score = 125 bits (138), Expect = 9e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||||||||| ||||||||||| || || |||||| ||||| ||||||||||| Sbjct 6073 GTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 6014 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || || ||||||||||| ||||| || Sbjct 6013 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGC 5954 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||| || |||| |||||||| ||||||| Sbjct 5953 CGCAAAGGCAACGAGACGCTCTGCAAAGG 5925 >seq3632 Length=354 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/126 (76%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 170396 CCGAAGAACCATATGAGGGTGCGACTGTCCTGGAGGCCCAAA--AGGGTGCGTACTATAC 170453 ||||||| | ||| || ||||| |||||||||||| |||||| ||| | | || || Sbjct 162 CCGAAGACCAATACGAAGGTGCCACTGTCCTGGAG-CCCAAAGCAGGCTAC-TATGATCG 105 Query 170454 CCCGATCACAGCCCTTGATTTTGAAGCACTGTATCCATCAATTATGATGGCACACAACTT 170513 || ||| || |||| ||||| | | | |||||||| || | ||||||||||||||| | Sbjct 104 ACCCATCGCAACCCTGGATTTCGCATCGCTGTATCCCTCGGTCATGATGGCACACAACCT 45 Query 170514 GTGCTA 170519 ||||| Sbjct 44 TTGCTA 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613387688797440