Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq539 149 1e-30 >seq539 Length=9559 Score = 149 bits (164), Expect = 1e-30 Identities = 375/569 (66%), Gaps = 6/569 (1%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || |||||||| || |||||| ||| || |||||||| || ||||||| ||||||||| Sbjct 6096 AAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAG 6037 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | |||| || ||||||| |||||| |||||||| || || | || |||| |||| Sbjct 6036 AAGGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCG 5977 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| ||||| ||||||||||| || ||||| | ||| |||| | ||| || Sbjct 5976 GAGAAGAAGATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCTTT 5917 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 ||| |||| | |||||| |||||||||| || | ||| ||| ||| Sbjct 5916 CGGTCGCTAATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCG 5857 Query 160154 ACGGCGTTAAA---CAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGC 160210 ||||||| ||| ||| | |||||| | || ||| ||| | || || Sbjct 5856 ACGGCGTCAAAGAGGAATTCGCGCTGCTCGGGC---TCACGGATGTAAGTGTCGATGAGA 5800 Query 160211 TTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTC 160270 ||| || | || | ||| | || || || ||||| || |||||| || Sbjct 5799 AGCGAATAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGA 5740 Query 160271 GCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCG 160330 ||||| | ||| ||||| |||| | | | || || | || || | || Sbjct 5739 GCCTCGGCAGCCTGAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCA 5680 Query 160331 TCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGT 160390 |||| || || ||||| || | ||||| |||||||| || | ||||| | |||||| Sbjct 5679 TCGGAAGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGC 5620 Query 160391 CTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCA 160450 | || ||||||| | ||| | || | || | ||| || ||| |||| || | Sbjct 5619 TTGTTGTCCCAGTCATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAA 5560 Query 160451 GCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 |||| || | |||||||| |||||| Sbjct 5559 GCCTCGGCCTTCTTGTACATTTGCCAGAT 5531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795000303767040