Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq97 297 2e-75 seq108 114 2e-20 seq383 84.2 3e-11 >seq97 Length=50192 Score = 297 bits (328), Expect = 2e-75 Identities = 1128/1744 (65%), Gaps = 55/1744 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 ||||| || || |||| || |||||||| |||||| |||| | ||||| |||| Sbjct 19653 CGAAGGTAGTAGGTACCGGTCTTGAGACCCTTCTTCCAACCGTAGAAGTGCATCGAAGTC 19594 Query 109468 AGTTTG--GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGA 109525 | | ||||||| ||| | || | ||| | ||| |||||||| |||| Sbjct 19593 AACTGACCGAAAGTG--GGAGCCGACAAGTGGATGTTGAGCGATTGAGACTGGCAAATGA 19536 Query 109526 ATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCT 109585 | ||| || ||||| ||||||||||||||| ||| ||| || ||||| ||||||| Sbjct 19535 AAGCACCTCGGTCAGCGGCCATGTCGATGATAGCCTTCTGGGAGATCTCCCAAACAGTCT 19476 Query 109586 TGTACAAATTCTTGATATCATCGGGAATGTCCACGAT-GTTTTGAATAGAGCCACCAGCC 109644 |||| | ||||||||| ||||| || ||| || ||| || || || ||||| Sbjct 19475 TGTAGAGCTTCTTGATACGGTCGGGGATA-CCAGGAACGTTCTGGATGGAACCACCG--- 19420 Query 109645 TTCACCATGAGA---TCCTTCATCTCTTTCGA-CCAGAGACCGACCTTTTTGAGATCGT- 109699 | | |||| | | |||||| | | ||| ||| | || || ||| ||| Sbjct 19419 TGAGCGATGATACGGTTCTTCAT-TGTGTCGTTCCACAATCCCTGCTCAACGAGTTCGCG 19361 Query 109700 ---CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 |||| | | | ||| |||| || |||||||||| || || || ||||| Sbjct 19360 GAGCAACCA-AGGGTTGACGACCTGGA---ATTCACCAGCGAGGACACGACGAGAGTAGA 19305 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 |||| | |||||||| |||||||| || ||| || | ||| || || || || | Sbjct 19304 TGTTGGAGGTGTAGGGCTCGAAACATTCGTTGAAACCCAAGATCTGACTTGTAGATGCGG 19245 Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC---CTTCG---TCTTTACCCGCT 109870 | ||||||||||| | | || ||| |||||||| ||| | |||| || | Sbjct 19244 TAGGCATGGGAGCGAGCAAGAGCGAGTTGCGGAGACCGTGCTTGGCGATCTTGGCCT--T 19187 Query 109871 CACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTG 109930 | || | || ||| || || || | | ||| |||| |||||| || Sbjct 19186 GAGGC-TAGC---CCAGTCCCAAAGATCGGAAGG---AGTGACACC---CCACATGTCGT 19137 Query 109931 GTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCT 109990 || ||| |||||| | ||||||||| || | | ||||||| | || | | | Sbjct 19136 ACTGGAGTTCACCCTGGGAAGCAGGAGAGCCGGCGTAGGTCTCGTAGGTGCCGTGCTCTT 19077 Query 109991 CGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCAT 110050 ||||||||| | || ||| || || ||||| || || ||||| || || || | | Sbjct 19076 GAGCCAACTCGCACGATCGCTCAAGAGCGGCATGGTAGATGGTCTCGAAGATCTGGACGT 19017 Query 110051 TCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTA 110110 ||| | |||| ||| | ||||||| ||| | || || |||| || | Sbjct 19016 TCAATCGACGAGCCTCGGGCGATTCGAAGGCGTAACCCATGATCATGAAGGCATCGGCAA 18957 Query 110111 GACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTA 110170 ||||||||||||||| ||| || ||||| || ||||||||| || ||||| || | Sbjct 18956 GACCCTGAACACCGATACCGATAGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAA 18897 Query 110171 CGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTT 110230 | ||||| ||||| |||||||| | || | ||||| | || ||| | | | Sbjct 18896 CAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATAGCCTTGGCAACCT 18837 Query 110231 CATGGA---GTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAG 110287 | || | | |||| || | || | || || | | || | |||| |||| Sbjct 18836 CGTGCAAACGCTTGTAGTCGTAGACC---TTGGTGACAGGGTCGATGAAGGTGGGAAGAG 18780 Query 110288 CAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCG 110347 | || || ||||| ||||| |||| | ||| || | |||| || | || || | Sbjct 18779 CGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAG 18720 Query 110348 TACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATG 110407 | ||||||||||| | ||| || ||| | ||||||||| || || ||| |||| | Sbjct 18719 TGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAG 18660 Query 110408 CATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCC 110467 | ||||| ||||| ||| | ||| ||||||| || ||||| |||| ||| ||||| | || Sbjct 18659 CGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACC 18600 Query 110468 ATA-CATCGGCGGCGGGGACAGTTGCG-TTAGCGAGACCTTCCTCCTCGTACTTGGTGTA 110525 | | | || | || ||| | |||| || | ||||||| ||||||| ||| Sbjct 18599 AGAGCTTCTG-AGCCTTGAC-GGTGCGCTTGGAACGACCTTCAGCCTCGTAACGCTCGTA 18542 Query 110526 CAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAA 110585 | |||||| |||| ||||| |||| ||||| || || ||| || | Sbjct 18541 GAGACGCTCAAACTCCTCACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGGGCACAT 18482 Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645 ||| ||||| | || || |||||||||||||||||| || || |||| ||| | || Sbjct 18481 GAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGC 18422 Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705 |||| || |||||| |||| | ||||| | ||| ||||| ||| | || | || Sbjct 18421 GTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAA 18362 Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACG 110762 || | || |||||||||||| || || | |||| || | || || ||| Sbjct 18361 CTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTT 18302 Query 110763 ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 ||| |||||| || || || || ||| |||||||| | ||||| |||| || || Sbjct 18301 ACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACC 18242 Query 110823 ATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | | ||| || || || ||| || | | | |||||| ||| || | Sbjct 18241 GTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGAATGCAGTGAATGTT 18182 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAA 110941 || |||||| || || || ||| || ||||| ||| |||| || | |||| Sbjct 18181 CAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCT-TGAGGGTGTCGTAAA 18123 Query 110942 TACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAG 111001 | ||||| ||||| || |||| |||||| || || || || || | ||||||| | | Sbjct 18122 TGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGAGGATGGG 18063 Query 111002 GCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGT 111061 | || || || |||||||| || || | || ||| | || ||| ||||| || Sbjct 18062 GAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGT 18003 Query 111062 TGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGA 111121 |||| || |||| || | || | ||||||||||||| || || ||||||| Sbjct 18002 TGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACAGCGACACGCATGA 17943 Query 111122 ACAT 111125 ||| Sbjct 17942 GCAT 17939 >seq108 Length=46585 Score = 114 bits (126), Expect = 2e-20 Identities = 218/314 (69%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT 11731 ||||||||| ||| || |||||||| || || | ||| || || || | | || | Sbjct 44191 TCTTACCGATAGCATCGATCTCATCAATAAAGATGATGCAAGGAGCGT-GCTTCTTGGCA 44249 Query 11732 GTTCGAAAAGT-TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTT 11790 | ||| | || || ||||| | | |||||||| || |||||||| ||||| | Sbjct 44250 TTGGCAAACATGTCTCGGACACGGCTAGGACCAACACCAACAAACATCTCGACGAACTCG 44309 Query 11791 GCGGCAGAACACTGAATG-AAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | |||| || ||| | || || ||| || ||||||||| | || || || | Sbjct 44310 GAACCAGAG-ACGGAAAGGAAAGGTACACCAGCCTCACCAGCAGTAGCCTTGGCTAGCAA 44368 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA-- 11907 |||||||| ||||| || | ||| | ||||| ||| ||||| ||||| ||||| ||| Sbjct 44369 GGTCTTACCAGTACCGGGAGGACCGGAGAGAATGGCACCACGAGGGATTTTGGCTCCAAG 44428 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 |||| ||| ||| |||||||||||||||| |||| |||| || |||||||| Sbjct 44429 CTTCTC--GTACTTCTCGGGCTTCTTGAGGAAGTTGACAAACTCCATAATCTCCTCCTTT 44486 Query 11968 GCGGAGTCGATACC 11981 || ||| ||||| Sbjct 44487 GCTTCGTCCATACC 44500 >seq383 Length=18078 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 |||| ||||| |||||||||| |||||| | | ||| || | |||||||| Sbjct 14762 AACCGGTACCGATACCTTCAGCACCGTTGAGTAGCACCTGTGGCACCACAGGCATGTACC 14821 Query 167417 AGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGG 167476 | | || || ||| ||||||||||||||| ||| | ||| | || ||||| || Sbjct 14822 ACTGAGGCTCGATGCTCTGACCATCATCATCCAGGTATTCGAGCAAAGCGTCATCGTTCT 14881 Query 167477 GATCGAAGAGCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGAC- 167535 || |||||| || | ||||| ||| || ||||| ||||| | | ||| | Sbjct 14882 GAGGGAAGAGGGCGCGTGTGATCTTGGGCAGCGCGGTGAAGATATACCT-GGCCGAGGCA 14940 Query 167536 GCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595 ||||| || ||||| | | || ||||| |||||||| | |||||||| | |||| | Sbjct 14941 GCATCTTTACCACCGAGCAAACGAGTACCGAATTGACCCCTAGGCTCGAGCAAGTTGACG 15000 Query 167596 TTATT 167600 || || Sbjct 15001 TTGTT 15005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588861267475200