Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq97 219 5e-52 seq539 116 4e-21 seq383 109 6e-19 >seq97 Length=50192 Score = 219 bits (242), Expect = 5e-52 Identities = 574/866 (66%), Gaps = 21/866 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 ||||| ||||| || || | ||||||||||| |||||| | | ||||||| | Sbjct 18786 GGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATG 18727 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || ||||||||||| | ||| || || || | ||||| ||||| ||| | Sbjct 18726 ATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGG 18667 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||| || ||||||||||| ||| |||| | || ||||| ||||| |||| ||| || Sbjct 18666 TTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGATG 18607 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTT 106695 || | ||| | | || | | || | || || |||| || || || |||||||| Sbjct 18606 GCGTACCAGAGCTTCTGAGCCTTG-ACGGTGCGCTTGGAACGACCTTCAGCCTCGTAACG 18548 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 |||||| |||||||||||||| ||| | |||||| || || || || Sbjct 18547 CTCGTAGAGACGCTCAAACTCCTCACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGG 18488 Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 106815 || | || ||||||| || || |||||||| ||||||||| || || |||| ||| Sbjct 18487 GCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCA 18428 Query 106816 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 106875 || | | ||||| || | ||| | ||||| | ||| ||||| || || || Sbjct 18427 GAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTC 18368 Query 106876 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 106935 |||||||| | || ||||| |||||| ||||||| |||| || | | || | Sbjct 18367 GAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACC---GGG 18311 Query 106936 ACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 |||| ||| | || | || || || || ||| ||| || || |||||||| || Sbjct 18310 ACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGG 18251 Query 106990 AATAATACCAT--CTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCA 107045 || ||||| | |||| ||| || || || || |||||| | | ||| | Sbjct 18250 AACGATACCGTTGCTGA--CACCGTTGGTGCCGGCAATGTACGAG--CCAGTACCTCGAA 18195 Query 107046 CATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAA 107105 || |||| || ||||| || || || ||| ||||| ||||| | | | Sbjct 18194 TGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGA 18135 Query 107106 GAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACA 107165 | || | || || || | ||| ||||| ||||| |||| | |||||| || || | Sbjct 18134 GGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGA 18075 Query 107166 TCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CT 107224 ||| || || || ||||| |||||||||||||| | |||||| | || ||| | Sbjct 18074 GCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGT-AAAGTACTTT 18016 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 || ||||| || ||| ||||| | || || ||||| | ||||| || || | Sbjct 18015 TGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACA 17956 Query 107285 GCCACACGCATAAACATGTATTGGGG 107310 || |||||||| | ||||| ||||| Sbjct 17955 GCGACACGCATGAGCATGTGCTGGGG 17930 >seq539 Length=9559 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| |||||||| || ||||| || || || || |||||| || || ||||||||||| Sbjct 6073 GTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 6014 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | |||| | ||| || |||||||||||||||||||| || Sbjct 6013 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGC 5954 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 |||||| |||| || ||||| || |||| Sbjct 5953 CGCAAAGGCAACGAGACGCTCTGCAAAGG 5925 >seq383 Length=18078 Score = 109 bits (120), Expect = 6e-19 Identities = 273/409 (67%), Gaps = 12/409 (3%) Strand=Plus/Plus Query 169156 AGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCGGCAT 169215 |||||| || || | || | ||||||||||||||| || |||||||| | ||| || Sbjct 15626 AGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGCGAACCATCGTGATCCTGAT 15685 Query 169216 CTGTCATAATCATAAGACGACCATAGCG-AAGTTCAGAAACATCTTGGTAGTCTTTTCCT 169274 | ||||| ||||| | || || || || ||| | ||| || | || | ||| || Sbjct 15686 CGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTAACGTCGAGATATTGTTTGCCG 15744 Query 169275 TGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCC 169334 ||||| ||||| | |||| ||||| | |||| |||| ||| ||| ||| | Sbjct 15745 TGTTGCAGACCGAGAATCTCCTTGATGGCTTTGATCTCTGCGTTCTTCATGATCTGATCG 15804 Query 169335 ACTGAAGCGTCGCGGACATTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCA 169394 | ||| || || || || | ||| || ||||| || ||||| || |||| ||| Sbjct 15805 TGAGTAGCCTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGAAGACACCGTAGTTGTCA 15864 Query 169395 CGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACA 169454 || || || | ||||| || || || || | || ||||| ||||| || |||| | Sbjct 15865 CGACCCACTTCAACAAGACCGGCAACAGCGAGAGCCTTGGCTGAGTCACCTTCGGTGAGA 15924 Query 169455 ATGAGGGTACACTTTCCAGATTGC--GCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGG 169512 ||||| ||||| | || || | ||| ||| || ||||| || || || | ||||| Sbjct 15925 ATGAGTGTACAGTCCTTAGCTTTCCTGCC--ACCTGCATTGTTGGCATCTTCGAGCTTGG 15982 Query 169513 GAATACCAGTAATTTTGG---ACTTGCGAGCACCATCGGTTTTCTTGAG 169558 | || || || ||| |||| | ||| ||||| |||||||| Sbjct 15983 GGATGTTGGTGATCCTGGTACGCTTGTG---ACCGTCGGTCTTCTTGAG 16028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589865871740160