Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq957 120 2e-22 seq17 102 5e-17 seq93 100 2e-16 >seq957 Length=1833 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| ||||| |||| || ||||| |||||||| || Sbjct 698 TCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAA 757 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||| |||||| Sbjct 758 ATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 817 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| ||||| || || || |||||||| || Sbjct 818 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACG 877 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 878 AAGATCTGCAT 888 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| | ||||| || || || |||||||| || || || || || ||||| |||| Sbjct 220 CAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATC 279 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| |||||| || ||||| || | ||| |||||||| | || | || |||||||| Sbjct 280 CTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTC 339 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| ||||| | |||| || | || || || | || ||||| Sbjct 340 CTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACTTCCAAAGTGATGGT 399 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| ||||| ||||||||||||||| Sbjct 400 CTTTCCTGTGAGCGTCTTGACAAAGATCTGCATA 433 >seq17 Length=97802 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||||||| || | || |||| || ||||| || || || || Sbjct 47417 TCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAG 47358 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||| || | || | || |||||||| ||||| |||||| Sbjct 47357 ATGAGTCGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 47298 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| ||| ||||| || || ||||| ||||| ||| Sbjct 47297 TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACA 47238 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 47237 AAGATCTGCAT 47227 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | || |||| || ||||| || || ||||| Sbjct 47645 TCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAG 47586 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||| || |||||| || ||| Sbjct 47585 ATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTAACGTTG 47526 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || || || || | || || || || || || | |||||| || Sbjct 47525 TCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACG 47466 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 47465 AAGATTTGCATA 47454 >seq93 Length=51913 Score = 100 bits (110), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| || ||||| ||| | || |||| || ||||| Sbjct 49129 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCGAGCTG 49070 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || |||||||| || || || ||||| || | || | || |||||||| ||||| Sbjct 49069 CTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 49010 Query 34898 CTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTC 34953 ||||| || | ||||| | ||| | ||| || |||| ||| ||||| || | Sbjct 49009 GGCCTTGAC--AT--TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTAC 48954 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||| || || |||||||||||||| || Sbjct 48953 CCGTGAGGGTTTTAACAAAGATCTGCATCTT 48923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324571942340352