Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq957 122 7e-23 seq93 100 2e-16 >seq957 Length=1833 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| || || | ||| | ||| | || ||||| ||||| || |||||||| | | Sbjct 434 CCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAG 493 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || || | ||||| || ||||| || | ||||| || || || ||| Sbjct 494 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 553 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || || || || ||| | || | |||||| || | || ||| Sbjct 554 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACT 613 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | || |||||||| || || || ||||| |||||||| Sbjct 614 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 660 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||| | ||||| ||| || || || ||||||||||| | | ||||| | Sbjct 217 ACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCC 276 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| ||||| || ||||| ||||| ||||| ||||| || || || ||||| ||||| || Sbjct 277 ATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTT 336 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || ||| | || | ||||| || | ||| ||||| | ||||| Sbjct 337 GTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACTTCCAAAGTGAT 396 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | || || ||||| |||||||| Sbjct 397 GGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCAT 432 >seq93 Length=51913 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || || |||||||| | || || | |||| || | ||| Sbjct 49128 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCGAGCTGC 49069 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | |||||| ||||| || ||||||||||| || || || || || Sbjct 49068 TTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 49009 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | || || || || |||| || || || || Sbjct 49008 GCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTG 48949 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 48948 AGGGTTTTAACAAAGATCTGCAT 48926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396203134843488