Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq97 260 3e-64 seq539 210 4e-49 seq240 84.2 4e-11 >seq97 Length=50192 Score = 260 bits (288), Expect = 3e-64 Identities = 1160/1803 (64%), Gaps = 87/1803 (5%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| || || ||| |||| ||||| | | | ||||||||||||||| |||||| | Sbjct 19561 GTTGAGCGATTGAGACTGGCAAATGAAAGCACCTCGGTCAGCGGCCATGTCGATGATAGC 19502 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 ||||||||| |||||| || |||||| ||| | |||| || |||| || || Sbjct 19501 CTTCTGGGAGATCTCCCAAACAGTCTTGTAGAGCTTCTTGATACGGTCGGGGATACCAGG 19442 Query 212816 GATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 | |||||| | || || | ||| ||| | | | | ||| |||||||| Sbjct 19441 AACGTTCTGGATGGAACCACCGTGAGCGATGATACGGTTCTT---CATTGTGTCGTTCCA 19385 Query 212873 GAGGCCCCTGGTCTCCAGGCACTT----GACCAGGTGAGGGTTGACTATCTGGAAGTCAC 212928 | ||| || ||| | | | || || || ||||||||| | |||||| |||| Sbjct 19384 CAATCCC-TG--CTCAACG-AGTTCGCGGAGCAACCAAGGGTTGACGACCTGGAATTCAC 19329 Query 212929 CTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCC 212988 | | ||| || | | ||| | ||| || ||||||||||||| | |||||| | Sbjct 19328 CAGCGAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGGCTCGAAACATTCGTTGAAAC 19269 Query 212989 CCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTC 213048 ||| ||||| || || || ||||||||||| | || ||| ||| | | | Sbjct 19268 CCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGGAGAC 19209 Query 213049 CGTGCTCGCCGATGA-GGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCG 213107 |||||| | |||| ||| || ||| ||||||||||| | || ||| Sbjct 19208 CGTGCTTGGCGATCTTGGCCTTGAGGCTA-GCCCAGTCCCAAAGATCGGA-AGGAG---- 19155 Query 213108 TCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAA 213167 | || ||||||||| |||| | || | | | || ||| ||| Sbjct 19154 ----TGACACCCCACATGTCGTACTGGAGTTCACCCTGGGAAGCAGGAGAGCCGGCGTAG 19099 Query 213168 GAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAG 213227 | ||||| ||| ||||| | |||| |||||| || || || || || | |||| Sbjct 19098 GTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCGCTCAAGAGCGGCATGGTAG 19039 Query 213228 ATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGG------C 213281 ||||| || || |||| ||| | ||||| || || ||||| | Sbjct 19038 ATGGTCTCGAAGATCTGGACGTTCAATCGACGAGCCTCGGGCGATTCGAAGGCGTAACCC 18979 Query 213282 ATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGT 213341 || |||||| || |||| || || ||||| || ||||| ||||| || | ||| Sbjct 18978 ATGATCATG------AAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGGTGA 18925 Query 213342 CTCAGGTTAGA-CTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTT 213400 | || |||||| | |||| |||||| | ||||| ||||| ||||||||||||||| Sbjct 18924 CGCATGTTAGAACGACGAGC-CTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTT 18866 Query 213401 GAGGTT---GCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTA 213457 | ||| || | | ||| |||| || | | || || || | | | || | Sbjct 18865 CAAGTTCTTGCAGATAGCC---TTGGCAACCTCGTGCAAACGCTTGTAGTCGTAGACCTT 18809 Query 213458 GCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC 213517 | | | | || || || |||||| ||| ||||||||||| || ||||| Sbjct 18808 GGTGACAGGGTCGATGAAGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTC 18749 Query 213518 CT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCA 213576 | | ||| | ||||||| |||||||| ||||||| |||| ||| ||| || || | Sbjct 18748 ATCGGGAG-CACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGA 18690 Query 213577 GGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGG 213636 |||||| ||||| ||||| |||||||| ||||||||||| ||| ||||| || | Sbjct 18689 GGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAG 18630 Query 213637 TCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGA 213696 |||| ||| ||| | || || | |||||| | | |||||||| ||| || Sbjct 18629 TCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACGGTGCGCTTGG 18570 Query 213697 CAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAG-AC 213754 | || | | ||||||||| | |||||||| | || || | || || | Sbjct 18569 AA----CGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAACTCCTCACCGTAGCAG 18514 Query 213755 CCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGA 213813 | | | || || || || ||| |||||||| ||| || |||| | ||| | Sbjct 18513 TCAG-CGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCA-A 18456 Query 213814 CTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCT 213873 | |||| |||||| || || || ||||| || ||| ||| || || | || | | Sbjct 18455 CCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTT 18396 Query 213874 CGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCT 213933 | ||| || ||| ||||||| || || || ||||||| |||| |||||| |||| Sbjct 18395 CTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCT 18336 Query 213934 CCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCA 213990 | ||||||||||||||||| || || | |||| || |||||||| || | ||| Sbjct 18335 CAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGG 18276 Query 213991 CCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTG--GACTGTCCGTTGGTTCCCGC 214048 ||||||||| || || | ||| || | |||||| ||| |||||||| || || Sbjct 18275 TGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGAC--ACCGTTGGTGCCGGC 18218 Query 214049 TATATACGAGCCGGAGGCCCTC--AGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTAC 214106 || |||||||| || |||| | | | ||| | || ||||| |||||| | Sbjct 18217 AATGTACGAGCC--AGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTC 18160 Query 214107 TTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTG 214166 |||||||||||||| ||| | | | || || ||||| | || |||||| | Sbjct 18159 TTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTC 18100 Query 214167 AGGTTCAGCAA-GAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGT 214225 | | || ||| ||| ||| ||||||||| || || | ||||| |||||| || || Sbjct 18099 ATG-GCAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGT 18041 Query 214226 GGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC--CAGGACTGAG 214283 || ||| || | | |||| | || | ||| |||| ||||| || ||| Sbjct 18040 TGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACT--C 17983 Query 214284 GGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCT 214343 |||||| || ||| || | |||| | ||| |||||||||||||| | ||| Sbjct 17982 TCGATGTCCTGGCCGTGAATACCAACAGCGACACGCATGAGCATGTGCTGGGGACGCTC- 17924 Query 214344 ATGGGTCCTTTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCA 214397 | |||| ||| || ||||| |||||| ||||| ||||||||||| || Sbjct 17923 -AGCAACCTT----GCCGTTGATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCG 17869 Query 214398 AAGTAGGAGTAG-GTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAGCTCTTCCGCGTG 214456 || || |||| | | | ||| | ||| |||| || | ||| |||| ||| ||| Sbjct 17868 AAAAAGTTGTAGTGGAAG-TCGCGCTCGTAGATGATAGCCGAGTCAAGCTGGTCCTTGTG 17810 Query 214457 CTC 214459 ||| Sbjct 17809 CTC 17807 >seq539 Length=9559 Score = 210 bits (232), Expect = 4e-49 Identities = 489/727 (67%), Gaps = 24/727 (3%) Strand=Plus/Minus Query 47961 GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA-C 48019 |||| |||| || || |||||| ||||| || | |||||||| || ||||| || | Sbjct 6254 GATCACCGACATATTCTATGTATGAAGACATCAGCGAAATGTTCATCCCAATGAGAGAGC 6195 Query 48020 ACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGC 48079 |||| |||||| | |||| ||||| ||||| || | || || || | | || | Sbjct 6194 ACGGT-AAAGCCGTGCTGAGGAACTCTTTCTCGATTTCGACCGCCTCGGCGATGATTTTG 6136 Query 48080 TTAACG-----CGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 ||| |||| | | | | || ||| ||||| || |||| | ||||| Sbjct 6135 AGGACGGTATCCGGG--TGGGCGCGCTTCTTG---AGGTGGCTGA---AGAGGAGGCAGG 6084 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| |||| | || ||||| ||| ||||||| ||||||||||| |||||| | Sbjct 6083 CGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGG 6024 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| || | || ||||||||||| || | |||||||| || ||||||||||| | Sbjct 6023 GCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATAC 5964 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || ||||| || || ||| | |||| | || | || || ||| |||| Sbjct 5963 CCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCTTTCGGTCGCTAATCC 5904 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 || || |||||||| ||||||| ||||| | || || || || | ||| |||| Sbjct 5903 AGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCAAAGA 5844 Query 48375 GCTTCTTGCACT-CACCTGCGTCCGCAACATAG-GTAG-TGAGCAGCTTTGCGTACATCT 48431 | | || || | | || || | || || | |||| ||| | || ||| Sbjct 5843 GGAATTCGCGCTGCTCGGGCTCACGGATGTAAGTGTCGATGAGAAGC---GAATAGGTCT 5787 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||| ||||||||| | ||||| ||| Sbjct 5786 CGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGCAGCCT 5727 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | || || | ||| | ||| | || ||||| ||||| || ||||| |||||||| | Sbjct 5726 GAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGCGA 5667 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGC 48608 ||||||| ||||| || | ||| || |||||||||| | |||| || |||| Sbjct 5666 AGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAGT 5607 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | || | ||| ||| ||||| | || || | ||||||||||| || || || | Sbjct 5606 CATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCT 5547 Query 48669 TGTACAT 48675 ||||||| Sbjct 5546 TGTACAT 5540 >seq240 Length=27542 Score = 84.2 bits (92), Expect = 4e-11 Identities = 131/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 38894 ACCGGAGAATGCGTACCTGTCCAACACCAGGCTCGTCCCCCG-TTCCAGCTTCTGCTTCA 38952 ||| ||||| ||||| | ||| | || | |||| || || | ||| ||| ||| ||| | Sbjct 14542 ACCCGAGAAAGCGTATCGGTCGCAGACGATGCTC-TCTCCTGCTTCGAGCGTCTTCTTGA 14600 Query 38953 TCAGGGGCACCAGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCA 39012 || || || ||||| | |||||||||||||| ||||||| || |||||||| | Sbjct 14601 TCGAGGCGACGCATTCCCAGCGATTGGCGGAGAAGAGAAGGTGGATCGCCTGGTCGTCTA 14660 Query 39013 GCTCCGTCTTACTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTCGG 39072 | || | | | ||||| ||| ||||||||| || |||| ||||| || || | Sbjct 14661 GGTCGCTGGTCTGGGCGAGGTAAGAGTTGATCATCTGACCAATGGCGGTGGTCCTCTCCG 14720 Query 39073 GGAAC 39077 ||||| Sbjct 14721 GGAAC 14725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931351337410560