Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq97 224 2e-53 seq539 194 3e-44 >seq97 Length=50192 Score = 224 bits (248), Expect = 2e-53 Identities = 826/1282 (64%), Gaps = 39/1282 (3%) Strand=Plus/Minus Query 221370 CGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGT 221429 |||| | |||||||| |||| | || ||| |||| || || || || || | Sbjct 19103 CGTAGGTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCGCTCAAGAGCGGCAT 19044 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 ||||||||||||| |||||| ||| | || |||||||| || ||||| Sbjct 19043 GGTAGATGGTCTCGAAGATCTGGACGTTCAATCGACGAGCCTCGGGCGATTCGAAGGCGT 18984 Query 221490 TACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 || || ||| ||| | ||||| || ||||| || ||||||||||| || | ||| | Sbjct 18983 AACCCATGATCATGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGGTGAC 18924 Query 221550 TCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTG 221608 | |||| ||| || | || || || || || |||||| |||||| | ||||| Sbjct 18923 GCATGTTAGAA-CGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTTC 18865 Query 221609 AGGTTCAGAGTGATGACTTTAACCACCTCGGTCA---GCTTCTGGTGATTGAACACCAAC 221665 | |||| ||| | || | |||||| || |||| | || | || Sbjct 18864 AAGTTCTTGCAGATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGTCGTAGA-------- 18813 Query 221666 TCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACAC 221725 || | ||| |||| | | || | | || || | | ||| ||||| || Sbjct 18812 ------CCTTGGTGACAGGGT-CGATGAAGGTGGGAAGAGCGATGGAGGCAAGGTTGCAA 18760 Query 221726 ACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTG 221785 || || ||||| || | |||| |||||||| || || | |||| ||||||| Sbjct 18759 ACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTG 18700 Query 221786 ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAG 221845 || || || |||| || || || |||||||| |||||||||||||||||||| || ||| Sbjct 18699 ATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAG 18640 Query 221846 GGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCAC 221904 || |||||||| ||| | | | || || || |||||| | |||| || | || Sbjct 18639 GGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCT-TCTGAGCCTTGAC 18581 Query 221905 CGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTC 221964 || | |||| ||| || | || | | | || ||||| ||||||| || Sbjct 18580 GGTGCGCTTGGAACGACCTTCAGCCTCGTAACGCTCG---TAGAGACGCTCAAACTCCTC 18524 Query 221965 ACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTT 222024 |||||| || | || || || ||| | ||| ||||| || ||| | ||| Sbjct 18523 ACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTT 18464 Query 222025 GTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGT 222084 | | ||||||| ||||||||| || || | ||| || || | ||||| || | || Sbjct 18463 CTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGC 18404 Query 222085 CCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTG 222144 || || ||| |||| ||| || | || || | |||||||| | || | ||| Sbjct 18403 ACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTG 18344 Query 222145 CCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCAT 222204 ||| ||||| | |||| ||| | || ||||| |||||||| |||||||| || || Sbjct 18343 CCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTA 18284 Query 222205 CCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGT 222264 | | |||||||| ||||| | || || | |||||| ||||||||| Sbjct 18283 ACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGT 18224 Query 222265 GCCCTTAATGTACGCACCGCCGGCCCTC-AGGTTACTGGCAG-ACATGCCGATACCACCG 222322 ||| |||||||| | | | |||| | | || | || || || || ||| Sbjct 18223 GCCGGCAATGTACGAGC--CAGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCG 18166 Query 222323 GCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCC 222382 ||| || ||||||||||| ||| ||||||| ||||| ||||| || || ||||| Sbjct 18165 GCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCA 18106 Query 222383 TCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAAC 222442 ||||| | | | || ||||| ||||| | ||||| | || | | ||||| || Sbjct 18105 TCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAG 18046 Query 222443 AGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC--TACGA 222500 || || || |||||| |||||||| ||||| || | ||| ||||| || | Sbjct 18045 AGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCA 17986 Query 222501 CTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCC 222560 |||| |||||| | |||||||| | ||| | |||| ||||| |||||| | Sbjct 17985 CTCT--CGATGTCCTGGCCGTGAATACCAACAGCGACACGCATGAGCATGTGCTGGGGAC 17928 Query 222561 TCTCCACAGGACCCTT---GGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACC 222617 || ||| | |||| | | || ||||| ||| || || ||||||||||| | Sbjct 17927 GCT---CAGCAACCTTGCCGTTGATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGC 17871 Query 222618 CAAAGTAGTTGAGGTCAAAGTC 222639 | || ||||| || ||||| Sbjct 17870 CGAAAAAGTTGTAGTGGAAGTC 17849 >seq539 Length=9559 Score = 194 bits (214), Expect = 3e-44 Identities = 443/658 (67%), Gaps = 28/658 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||||||||| ||||| || || Sbjct 5531 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACCTC 5590 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 |||||||| | | | |||| || |||| | | | |||||| || || || Sbjct 5591 TCCAAGGACCTTCATGACTGGGACAACAAGCTCAA--CGACAACGAGCGTCACTTCATCT 5648 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || || || |||||||| || |||||||| || |||| Sbjct 5649 CCCACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAGC 5708 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| || || ||| | ||||| || ||||||||||||||||| | Sbjct 5709 GTTTCAGTTCCGAGGTTCAGGCTGCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGA 5768 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACA-TTACAGACGTC 25770 | || || | ||||| ||| ||| | |||||| || || ||| ||||| ||| Sbjct 5769 TGGAGAACATCCACTCCGAGACCTATTC---GCTTCTCAT--CG-ACACTTACATCCGTG 5822 Query 25771 GCCGAGAG-AGATCGG----CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGA 25825 | ||| || || || |||| ||| |||| ||| || | ||||| || Sbjct 5823 AGCCCGAGCAGCGCGAATTCCTCTTTGACGCCGTCGAAACCATCCCGGTCGTCAAGCAGA 5882 Query 25826 AGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGG 25885 |||| |||||| | ||||| | | || | || || |||| ||||| || | Sbjct 5883 AGGCTGACTGGGCCCTCCGCTGGATTAGCGACCGAAAGGCCACCTTTGCAGAGCGTCTCG 5942 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 | |||||||| || || ||||| ||||| ||| |||||| || || | |||||||||| Sbjct 5943 TTGCCTTTGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTTTCGCCTCTATCTTCTGGC 6002 Query 25946 TCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 ||||| || || ||||||||| || ||| ||||||||||||||| | | |||| Sbjct 6003 TCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACG 6062 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTT 26065 ||||||| |||| || || |||||||| |||| || ||||| ||| | || | Sbjct 6063 AGGGTCTTCACACCGACTTCGCCTGCCTCCTCTTCA---GCCAC---CTCAAGAAGCGCG 6116 Query 26066 CTCA---AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | || || |||||| || |||||| ||||| || || |||||||| ||||| Sbjct 6117 CCCACCCGGATACCGTCCTCAAAATCATCGCCGAGGCGGTCGAAATCGAGAAAGAGTT 6174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928663861032960