Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq41 138 7e-27 seq957 111 1e-18 seq17 100 2e-15 >seq41 Length=73621 Score = 138 bits (152), Expect = 7e-27 Identities = 365/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| || || |||||||||| Sbjct 58271 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 58330 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | |||||||| || || ||||| | || || || |||||||| | || ||| Sbjct 58331 GTCGAGGTCATTGCCAACGATCAGGGTAACCGCACCACCCCCTCATATGTCGCCTTCACT 58390 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| || ||||||||||| || | || | || |||||| ||| Sbjct 58391 GACTCGGAGCGTCTCATCGGAGATGCTGCCAAGAACCAGGTCGCCATGAATCCTCATAAC 58450 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 ||| | || |||||||| | | ||||| || || || || || || || || || Sbjct 58451 ACTGTCTTCGATGCTAAGCGTCTTATTGGCCGCAAGTTCGACGACCCCGAGGTTCAGTCC 58510 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-AGAAGC 474627 || ||| || |||||||| |||| | || || || || || | || | | | Sbjct 58511 GACATGAAGCACTGGCCTTTCGAGGTCGTCAACACCGGCGGCAAGCCCCAGATCCGCATC 58570 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| | || || | || ||| | || ||||| |||||| | Sbjct 58571 GAGTACAAG--GGTGAGAAGAAGACCTTCACCCCCGAAGAGATCTCTTCCATGGTTCTCC 58628 Query 474687 CCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 ||| ||| | |||| |||| | || || || || | ||||| || | Sbjct 58629 TCAAGATGCGTGAGACCGCCGAG-GCCTACCTCGGTGGCACCGTCAAGGATGCCGTCGTC 58687 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || || || || |||||||| ||||| || || || ||||| || | ||| Sbjct 58688 ACCGTCCCCGCTTACTTCAACGATTCTCAGCGTCAGGCTACCAAGGATGCCGGTATCATT 58747 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | ||||| || ||| | ||||| || || || || || || ||||| | ||||| ||| Sbjct 58748 TCGGGTCTCAACGTTATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTACGGT 58807 Query 474866 CTTGATAAGAA 474876 || || ||||| Sbjct 58808 CTCGACAAGAA 58818 >seq957 Length=1833 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| | ||||| ||||| ||||| || || || ||| ||||||| ||||| Sbjct 211 ACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGACAGAGT 270 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| || | || || ||||||||||| | || || || ||||||||||| || Sbjct 271 TCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGAATACC 330 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| |||||| ||||| || || | | | | || ||| Sbjct 331 TTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACTTCCAA 390 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || || || Sbjct 391 -AGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTG 429 >seq17 Length=97802 Score = 100 bits (110), Expect = 2e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||||||||| |||||||| | ||| || || || || || || || | || Sbjct 47676 ACGAAGACGGAGGACAAGATGCAAGGTGGAC--TCCTTCTGAATGTTGTAGTCGGAAAGG 47619 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||||||||| ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 47618 GTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATA 47559 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 || ||||| || |||||||| || || || || || |||| | | ||| Sbjct 47558 CCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCA 47499 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| | |||||| ||||| ||||| Sbjct 47498 AGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTG 47458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267510726626432