Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq213 118 3e-21 seq539 91.5 4e-13 >seq213 Length=30149 Score = 118 bits (130), Expect = 3e-21 Identities = 243/357 (68%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 302490 GTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGT 302549 ||| || ||||| || ||||||| | |||| |||| ||||| | ||| | || || Sbjct 7261 GTCGATACCGTCCTCTCCGTAGGCAAACTGGATGACATTGTTGGTCGAATTACGAACAGT 7202 Query 302550 CATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACC 302609 ||| || | || ||| | |||||| | ||||| ||||||||||| |||||||| Sbjct 7201 GCCATCGTAGCAAACCATCACGTCTTCGAGCGCCTTGACCAAACGACGCTGGATATAACC 7142 Query 302610 AGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAA 302669 || | ||| || ||||| |||||||| ||||| ||||||| |||| || ||||| Sbjct 7141 GGTCTCTGCTGTCTTAACAGCCGTATCAATGAGACCTTCACGACCGGCCATGGCGTGGAA 7082 Query 302670 GAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT 302728 ||| | ||| | || || || || | || | || |||| ||||| ||||| || Sbjct 7081 GAAGAACTCCT-GGGCGGTAAGACCTCGAAGGTACGAATTCTCGACGAAGCCACGACTCT 7023 Query 302729 C--GGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 | ||| ||| ||| |||||||||||| || || | | || | || | || Sbjct 7022 CAGGGGTGAA--GTCATCCTTGGTAAAGTGAGGAAGACTACGGTGACGGAAACCAAAGGG 6965 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 |||||||| || || ||| ||| ||||| | || | ||||||||| || || Sbjct 6964 AATACGCTTACCCTCTACGGACTGTTGTCCGACACAGGCTGACATCTGCGAGATGTT 6908 >seq539 Length=9559 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATT 133567 ||||||||||| ||||| | |||||||| || || ||| ||| | ||| |||||| Sbjct 5936 CGTCTCGTTGCCTTTGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTTTCGCCTCTATC 5995 Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627 || ||||| || ||||||||| | | || || || || || ||||| || || || Sbjct 5996 TTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCC 6055 Query 133628 AGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||||| ||||||||||| || ||| Sbjct 6056 CGCGACGAGGGTCTTCACACCGACTTCGCC 6085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471523722179808