Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq97 156 5e-32 seq539 134 2e-25 seq313 86.0 8e-11 >seq97 Length=50192 Score = 156 bits (172), Expect = 5e-32 Identities = 269/389 (69%), Gaps = 19/389 (5%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| ||||| || |||||||| |||| |||||| Sbjct 18295 CTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCT 18236 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||||||||| || | ||| | ||| | | || | ||| | || || Sbjct 18235 GACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGAATGCAGTGAATGTTCAAACC 18176 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||||||||| | ||||||||| | || || ||||| |||||||| ||||| || Sbjct 18175 AATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCATC 18116 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||| |||||||| | || || || || |||||| || || || | ||||| Sbjct 18115 GATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCC 18056 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| || |||| || || || ||| |||||||| || ||| || Sbjct 18055 AGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGTAAGT 17996 Query 1630365 GGCG--AGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCG 1630422 || ||||| | || || |||| | || | ||| || | ||| Sbjct 17995 CTCGATAGCACTCTCG-------AT-GTCCTGGCCGTGA-----ATA----CCAACAGCG 17953 Query 1630423 ACGCGCATGAGCATGTACTGGGGCCGCTC 1630451 || ||||||||||||| |||||| ||||| Sbjct 17952 ACACGCATGAGCATGTGCTGGGGACGCTC 17924 >seq539 Length=9559 Score = 134 bits (148), Expect = 2e-25 Identities = 205/290 (71%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| |||||||| ||| | |||||| |||| ||| ||||||||||| || ||||| Sbjct 6067 ACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCACGCTT 6008 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | |||| || ||||| ||||| ||||| ||||| ||||| Sbjct 6007 CTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGCCGCAAA 5948 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCC--TTGTTGATCCACTTCATCGCC 869356 | | | ||| ||||| |||||||| |||| | | | | | ||||| | ||| Sbjct 5947 GGCAACGAGACGCTCTGCAAAGGT-----GGCCTTTCGGTCGCTAATCCAGCGGAGGGCC 5893 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGG---TGGTCC 869413 ||||| ||||| | | | || ||| | || |||| |||| ||||||| | | | Sbjct 5892 CAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCAAAGAGGAATTCGCGC 5833 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| || || || || |||||||| || |||||||||||||| Sbjct 5832 TGCTCG---GGCTCACGGATGTAAGTGTCGATGAGAAGCGAATAGGTCTC 5786 Score = 125 bits (138), Expect = 9e-23 Identities = 181/253 (72%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||| ||||| ||| | |||| || | || Sbjct 5784 GAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGCAGCCTGA 5725 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || || | ||||||||| ||||| || ||| || ||||| Sbjct 5724 ACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGCGAAG 5665 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGT-- 869807 || || |||||||| ||| ||||| ||||||| |||| ||||| |||||| Sbjct 5664 AAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAGTCA 5605 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 || | ||| | |||||| | ||||||||||||||||| || ||||||||||| | Sbjct 5604 TGAAG--GTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCT 5547 Query 869868 TGTACATCTCCCA 869880 ||||||| | ||| Sbjct 5546 TGTACATTTGCCA 5534 >seq313 Length=22788 Score = 86.0 bits (94), Expect = 8e-11 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||| ||||| || || ||||||||||| |||| || Sbjct 6320 GCTTGGAAAGCTCACCGGGGAGGATGAGGCGGACAGCAGTCTGGATCTCTCGCGAAGAGA 6261 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || || || | |||||| ||| ||||||| |||| | Sbjct 6260 TGGTCGACTTCTTGTTGTAGGAAGCGAGCTTGGAGGCCTCAGTGGCGATGCGCTCGAAGA 6201 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || | || || ||||| | | | ||| | |||||||||||| || |||||||| Sbjct 6200 TATCCTGAACGAAGGAGTTAAGAATGGCCATGGCCTTGTTGGAGATACCAGTGTCGGGGT 6141 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||| || || ||||||| | | ||||| Sbjct 6140 GAACCTGCTTAAGGACACGGTAGATGTAGGTGGAGTA 6104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105860303980128