Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq97 127 2e-24 seq93 118 1e-21 seq957 116 3e-21 seq17 91.5 1e-13 >seq97 Length=50192 Score = 127 bits (140), Expect = 2e-24 Identities = 929/1472 (63%), Gaps = 52/1472 (4%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | |||||| |||||||| || | || |||||| ||| |||||| |||| | || Sbjct 19348 GTTGACGACCTGGAATTCACCAGCGAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGG 19289 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| || |||||||| |||| |||||| || | ||||| |||||| || | Sbjct 19288 CTCGAAACATTCGTTGAAACCCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAG 19229 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TCGTT-CCTTGAGCGACGACCAGTC 138677 ||| || || || || | |||||| |||| || | ||||||| | |||||| Sbjct 19228 CAAGAGCGAGTTGCGGAGACCGTG---CTTGGCGATCTTGGCCTTGAGGCTAGCCCAGTC 19172 Query 138678 CCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGG 138737 ||| | |||| ||| | |||||| |||||||| | ||| || || Sbjct 19171 CCAAAGATCGGAAGGAGTGACACCCCACATGTCGTACTGGAGTTCACCCTGGGAAGCAGG 19112 Query 138738 ACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGA 138796 | ||| |||| | ||||| || |||||| ||||||||| | |||| || | Sbjct 19111 AGAGCCGGCGTAGGTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCGC-TCAA 19053 Query 138797 GCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGG---GCCTCGG-CG 138852 | || ||| ||| || || ||| ||||| || |||||| ||||||| || Sbjct 19052 GAGCGGCATGGTAGATGGTCTCGAAGATCTGGACGTT---CAATCGACGAGCCTCGGGCG 18996 Query 138853 CTCTCGTACGGCATG-CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCC 138911 | ||| | ||| | | | ||| |||| || ||||| || || || || || | || Sbjct 18995 AT-TCGAA-GGCGTAACCCATGATCATGAAGGCATCGGCAAGACCCTGAACACCGATACC 18938 Query 138912 GACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATC 138971 || |||||| || |||| || || || | || | ||| || ||||| | || Sbjct 18937 GATAGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTC 18878 Query 138972 GATGATTTTGTTTAAATT-TCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAAT 139030 |||||| ||||| || || | ||| || |||| | | | || || | | | Sbjct 18877 GATGATCTTGTTCAAGTTCTTGCA-GATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGT 18819 Query 139031 CGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTA 139090 |||| | || ||| || ||| ||||| || || | | || ||||| | Sbjct 18818 CGTA---GACC---TTG--GT-GACAGGGTCGATGAAGGTGGGAAGAGCGATGGAGGCAA 18768 Query 139091 TGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTAC 139150 |||||| || || || || ||||| | ||||| |||| || || | ||||| || Sbjct 18767 GGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGG 18708 Query 139151 TACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAA 139210 |||||||| ||||| | || | || ||| || ||||| ||| || ||||| | Sbjct 18707 AGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGA 18648 Query 139211 GCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAG 139270 | || | || | ||||| || || | ||| | ||| | | | | | || Sbjct 18647 GGATGAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAG 18588 Query 139271 C-TTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAAT 139329 | ||| || ||| | || | | || |||||| |||||||| || || Sbjct 18587 CCTTGACGGTG-CGCTTGGAACGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAAC 18529 Query 139330 CGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACG 139389 ||||||||| ||||| ||| || | |||| || || ||||||||||||||| || Sbjct 18528 TCCTCACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCG 18469 Query 139390 CCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCG 139449 |||||| || || | | ||||||| ||||| |||| ||| | |||| | | | || Sbjct 18468 CCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCA 18409 Query 139450 CGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCA 139509 || || |||||| ||| ||| || || ||||| ||||| || || Sbjct 18408 CGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCC 18349 Query 139510 GCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCG 139566 | |||||| || || | |||||||| | || || || ||| ||||| || ||| Sbjct 18348 GAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCG 18289 Query 139567 ACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTG-TTCC 139625 |||| || | | || ||||| || || | ||| || | | |||| | |||| || Sbjct 18288 ACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCG-TTGCTGACACC 18230 Query 139626 GTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTG-ATG------C 139678 |||||||| || | || | ||||| | || || | || || ||| | Sbjct 18229 GTTGGTGC------CGGCAATG-TACGAGCCAGTACCTCGAATGCAGTGAATGTTCAAAC 18177 Query 139679 CGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATACCT 139737 | || |||||| | ||||| || | | || || | | || ||||| || || Sbjct 18176 CAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTG-AGGGTGTCGTAAATGCCA 18118 Query 139738 CTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTG 139797 || ||| |||| ||| | || || || || ||||| || || || | ||| Sbjct 18117 TCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTG 18058 Query 139798 CCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTAC 139857 || || || || || || ||||| || || | || |||||| | | ||| Sbjct 18057 CCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGTAA 17998 Query 139858 GTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATA 139917 || ||||| || ||| | || ||| ||||| ||||| |||| ||| ||||| ||||| Sbjct 17997 GTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACAGCGACACGCATGAGCATG 17938 Query 139918 TGTTGGATCCGTTCGGCCACCGCGCCCTCGAT 139949 || ||| || || || ||| ||| | ||| Sbjct 17937 TGCTGGGGACGCTCAGCAACCTTGCCGTTGAT 17906 >seq93 Length=51913 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| ||||||| || || ||||| || || || ||||| || || | | Sbjct 48925 GATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCTTC 48984 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 48985 GGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 49044 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||||||||| || ||||| || ||| | | | | || ||||| || Sbjct 49045 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGGATTACAA 49104 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || || || ||| Sbjct 49105 CATCCAGAAGGAGTCCACCCTTCAC 49129 >seq957 Length=1833 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || |||||||| || || || ||||| || || | || Sbjct 888 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 829 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||||||||| Sbjct 828 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 769 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || ||||| || ||||| |||||| ||| | | || || || ||| Sbjct 768 CAGCGTCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGACGAACCCTTTCGGACTACAAC 709 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || ||| |||| Sbjct 708 ATCCAGAAGGAGTCGACCCTCCACCTGGT 680 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || ||||| |||||||| || || | Sbjct 660 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 601 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 600 GACACTATCGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 541 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| || || ||| | | || ||||| ||| Sbjct 540 CAGCGCCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACAAC 481 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || | || | || |||||||||| || || Sbjct 480 ATCCAAAAGGAATCCACGTTGCATCTCGTTCTGCGATTGCGAGGTGG 434 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || | ||||| ||| | | Sbjct 432 ATGCAGATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAATCTTCG 373 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || ||||| || || Sbjct 372 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAG 313 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| ||||| || |||||| |||||||| ||| |||| ||||| || Sbjct 312 CAGCGATTGATTTTTGCTGGTAAACAGTTGGAGGATGGACGAACTCTGTCTGATTACAAT 253 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| || || ||| | || ||||| Sbjct 252 ATTCAGAAGGAGAGTACTCTTCACCTTGTTTTGCG 218 >seq17 Length=97802 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || ||||| || || || || ||||| || || || | Sbjct 47226 GATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 47285 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 47286 GGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGATCA 47345 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || || || ||||| |||||| | | | || || || || Sbjct 47346 GCAGCGACTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAA 47405 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || || || || || || ||| Sbjct 47406 CATCCAGAAAGAGTCCACTCTCCAC 47430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449809959947520