Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq539 161 2e-33 seq97 127 3e-23 seq313 113 7e-19 seq477 95.1 2e-13 >seq539 Length=9559 Score = 161 bits (178), Expect = 2e-33 Identities = 235/330 (71%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| |||||||| ||| | |||||| ||| ||| ||||||||||| || ||||| Sbjct 6067 ACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCACGCTT 6008 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||| | |||| || ||||| ||||| ||||| ||||| ||||| Sbjct 6007 CTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGCCGCAAA 5948 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | ||||| ||||| ||||| ||| || | || | | ||||| | ||||| Sbjct 5947 GGCAACGAGACGCTCTGCAAAGGTGGCCTTTCGGTC---GCTAATCCAGCGGAGGGCCCA 5891 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGG---TGGTCCTT 794576 || ||||| | | | || || | || |||| |||| ||||||| | | || Sbjct 5890 GTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCAAAGAGGAATTCGCGCTG 5831 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 |||| || || || ||| ||||||||||| ||||| |||||||| ||||||||||| Sbjct 5830 CTCG---GGCTCACGGATGTAAGTGTCGATGAGAAGCGAATAGGTCTCGGAGTGGATGTT 5774 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || ||||||||| || || ||||| Sbjct 5773 CTCCATCATGATCTGGAAACCGTAGAAGCA 5744 >seq97 Length=50192 Score = 127 bits (140), Expect = 3e-23 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| ||||| || |||||||| || | |||||| Sbjct 18295 CTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCT 18236 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||||||||| || | ||| | ||| | | || | ||| | || || Sbjct 18235 GACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGAATGCAGTGAATGTTCAAACC 18176 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||||||||| | ||||||||| | || || | || || || ||||| ||||| || Sbjct 18175 AATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCATC 18116 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||||||||| |||||||| | | || || || |||||| || || | | ||||| Sbjct 18115 GATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCC 18056 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 || |||||||| || |||| Sbjct 18055 AGCGTTGAAGAGGGTTGGCG 18036 >seq313 Length=22788 Score = 113 bits (124), Expect = 7e-19 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| | ||||||||| || |||| ||||||| ||| || || ||| | | || Sbjct 6356 ACTTGGTGACCGACTTGGTACCTTCGGAGATGGCGTGCTTGGAAAGCTCACCGGGGAGGA 6297 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 | ||||| || || ||||||||||| || | ||| || |||||| | | Sbjct 6296 TGAGGCGGACAGCAGTCTGGATCTCTCGCGAAGAGATGGTCGACTTCTTGTTGTAGGAAG 6237 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | || | |||||| ||| ||||||| |||| || || | || || ||||| | | Sbjct 6236 CGAGCTTGGAGGCCTCAGTGGCGATGCGCTCGAAGATATCCTGAACGAAGGAGTTAAGAA 6177 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 | | ||| | ||||||||||| || ||||||||| |||||||| || || Sbjct 6176 TGGCCATGGCCTTGTTGGAGATACCAGTGTCGGGGTGAACCTGCTTAAGGAC 6125 >seq477 Length=12899 Score = 95.1 bits (104), Expect = 2e-13 Identities = 272/413 (66%), Gaps = 4/413 (1%) Strand=Plus/Plus Query 2018913 CTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCAC 2018972 || || ||| ||||||||||||| ||| ||||| ||| | || |||||| | || Sbjct 11481 CTTCCATGGGTCGAAAAGTACCGTCCGTTGCGACTCGATGACGTGGTCGGCAACAAAGAC 11540 Query 2018973 GCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCG 2019032 || ||| | || || | | | |||||||||| || | ||| | | || Sbjct 11541 ACCATTGACCGACTAAAAGTGATTCAGAACGACGGCAACTGTCCGCATCTCCTCATTTCG 11600 Query 2019033 GGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGC 2019092 || | ||| || | || |||||||| | || || || || || | ||| | || Sbjct 11601 GGTCTGCCGGGTATCGGAAAGACCACTTCCGTCCTCTGTCTTGCACGTGCGCTTCTCGGT 11660 Query 2019093 GCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTC 2019152 | ||| | | || | ||||| || ||||| || || |||||||| || || || ||| Sbjct 11661 GATGCCTACAAGGAAGGTGTGCTTGAGCTCAACGCCTCCGACGAGCGAGGTGTCGATGTC 11720 Query 2019153 GTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCAC 2019212 || || | | |||||| | ||| ||| | || || || || ||| | ||| Sbjct 11721 GTCCGAAACAAGATCAAGAACTTTGCTCAGAAGAAGGTCTCTCTCCCACCAGGCAGGCAC 11780 Query 2019213 AAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGA 2019272 ||| | |||| |||||||| ||||| | | || | || || ||||||||| | || Sbjct 11781 AAGATCGTCATTCTCGATGAAGCCGATAGTATGACACCAGCAGCACAGCAGGCCTTGCG- 11839 Query 2019273 TCG-ACCATGGAAAAGTACACCAACACGACGCGGTT-TGCGCTGGCCTGCAAC 2019323 ||| |||||||| | ||| ||||||| || || || ||| | || |||||| Sbjct 11840 TCGAACCATGGAGATCTACTCCAACACAACACGTTTCTGC-TTCGCGTGCAAC 11891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914588658841376