Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq957 145 2e-29 seq17 89.7 1e-12 >seq957 Length=1833 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| |||||||||||||| || |||||||||||||| ||| ||| ||| Sbjct 429 CAGATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAATCTTCGGAC 370 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || ||||| ||| || ||| || Sbjct 369 ACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAGCAG 310 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || || || |||||||| |||||| | ||| || | |||||||| | Sbjct 309 CGATTGATTTTTGCTGGTAAACAGTTGGAGGATGGACGAACTCTGTCTGATTACAATATT 250 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||| ||||||||||||||||||| | ||||| Sbjct 249 CAGAAGGAGAGTACTCTTCACCTTGTTTTGCGTCTTCG 212 >seq17 Length=97802 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| | || || || || ||| Sbjct 47230 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGAC 47289 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||| || || || || Sbjct 47290 ACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGATCAGCAG 47349 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| |||||||| || |||||| | || ||||| | ||| | | || |||||| || Sbjct 47350 CGACTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAACATC 47409 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||| ||||| ||||||||| Sbjct 47410 CAGAAAGAGTCCACTCTCCACCTTGTT 47436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181584825840864