Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq290 140 4e-28 >seq290 Length=24650 Score = 140 bits (154), Expect = 4e-28 Identities = 429/663 (65%), Gaps = 38/663 (6%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 || ||||| ||||||||||| | || | | | |||||||| || || ||||| ||| Sbjct 15895 ATGTTGAGTTTGGGGAAGGGAAGTGGTTCTCGTTCGAGCTGAATCTTGAGCGGCTCTACG 15954 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 || | ||||||||| ||||| |||| | | || | ||| |||| | Sbjct 15955 TGATCTTTGTAGACGTGAGCGTCACCCATTGAAAGAACGAGTTCCTTTGGCTCGCAATCA 16014 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || || | || | |||||| ||||||| | |||||| || |||||||||||||| ||| Sbjct 16015 GTGACTTTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCC 16074 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT--------------CCC 147097 | || | || | || | ||||||| ||| |||||||||| ||| Sbjct 16075 AATCCAAGATCGCAGGAACGTTGGTACATCTGACACGAGAGCTGCTTCCTGCCTTGACCC 16134 Query 147098 ----------CGTC------GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGC 147141 |||| || ||| | || || || | ||||| || || || || Sbjct 16135 TTGGCATATGCGTCAAGGTTGGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGA 16194 Query 147142 GCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCG--- 147198 |||||| || || || ||||||||| || || || || |||| ||| Sbjct 16195 GCCATGAGGGAGAGATCTTTGGGGTTCCATGCGCTGAGCA--AG-ATTCTGCGATCGGTA 16251 Query 147199 GGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAG 147258 ||||| |||| |||| ||||| || | || ||||| |||||||| || |||| Sbjct 16252 GGGTTGTTCTTGATCTTGTCGATGACATCGCGGAGTTGGTCGACGCCCTGACCGGTGTAG 16311 Query 147259 TTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGC 147318 | || | || || ||| ||| ||||| || | ||| ||||| ||||| ||||| Sbjct 16312 TCGGTGTCACAATCTCTGTATTCGGCGCCAAAATGACGCCATTGGAAACCGTAGACTGGA 16371 Query 147319 CCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCC 147377 |||| ||| || | |||||||| || || || | | || ||||| | || || Sbjct 16372 CCCAAGTCACCTTCCCTTCTGTGCTGCAATCCTCGAGAG-TCAAGGAACTCTCGTGAACC 16430 Query 147378 GTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCG 147437 || | | ||||||||| ||| || ||| | | |||| ||| ||||| || || Sbjct 16431 GTTGCCATCCCAGATGTGCACACCTTTGTCTGTGAGCAACTTGGAGTCGGTCTTTCCAGC 16490 Query 147438 GATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAG 147497 | |||||||| |||||||| | ||| || | | ||||| | ||| || |||||||| Sbjct 16491 AACAAACCAGAGTAGCTCCTCGAGAACACCGCGAAAGAAGACACGCTTTGTTGTCAGCAG 16550 Query 147498 GGG 147500 || Sbjct 16551 AGG 16553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583374336537600