Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq539 246 4e-59 seq97 145 1e-28 seq477 109 8e-18 seq313 95.1 2e-13 >seq539 Length=9559 Score = 246 bits (272), Expect = 4e-59 Identities = 397/558 (71%), Gaps = 22/558 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||||||||||||| |||||| Sbjct 5530 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACC 5588 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| |||||| ||| | |||| ||||||| || |||||| Sbjct 5589 TCTCCAAGGACCTTCATGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCT 5648 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| || ||| || |||||| ||||| ||||||||| | || Sbjct 5649 CCCACGTCCTCGCCTTCTT-CGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAG 5707 Query 1455952 CGCTTTATGAAAGAGGTCCAAT-TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || || | ||||| || |||| ||||| || | || ||||| ||||||||| Sbjct 5708 CGTTTCAGTTCCGAGGTTCAGGCTGCC-GAGGCTCGATGCTTCTACGGTTTCCAGATCAT 5766 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || ||||| ||||| || |||||||| ||| || || || Sbjct 5767 GATGGAGAACATCCACTCCGAGACCTATTCGCTTCTCATCGACACTTACATCCGTGAGCC 5826 Query 1456071 GGTCGAGAAG---GACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 |||| || || ||||||| |||| |||| || | ||| || | | | || Sbjct 5827 ---CGAGCAGCGCGAATTCCTCTTTGACGCCGTCGAAACCATCCCGGTCGTCAAGCAGAA 5883 Query 1456128 GGCCGACTGGGCGATGAAGTGGATCAACAA--GGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 ||| |||||||| | ||||| | | | | | |||| | |||||| ||||| | Sbjct 5884 GGCTGACTGGGCCCTCCGCTGGATTAGCGACCGAAAGGCCAC----CTTTGCAGAGCGTC 5939 Query 1456186 TCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 |||| | |||||| | ||| ||||| ||||| ||||| || |||| | | ||||| | Sbjct 5940 TCGTTGCCTTTGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTTTCGCCTCTATCTTCT 5999 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGC 1456304 ||||||||||||| || ||||||||||||| || ||| |||||| | ||| ||| Sbjct 6000 GGCTCAAGAAGCGTGGTCTCATGCCCGGTC-TCACCTTCTCCAACGAGCTCATCTCCCGC 6058 Query 1456305 GACGA-AGTTTTCACCCC 1456321 ||||| || ||||| || Sbjct 6059 GACGAGGGTCTTCACACC 6076 >seq97 Length=50192 Score = 145 bits (160), Expect = 1e-28 Identities = 270/390 (69%), Gaps = 21/390 (5%) Strand=Plus/Plus Query 259796 GAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTC 259855 ||||| |||||| | ||||||||||||||||| |||| ||| || | ||| || Sbjct 17924 GAGCGTCCCCAGCACATGCTCATGCGTGTCGCTGTTGGT-ATTCACGGCCAG--GACATC 17980 Query 259856 GACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACC 259915 || | ||| | ||| || | |||| ||||||||| ||| || || Sbjct 17981 GAGAGTGCTATCGAGA-----CTTACAACCT-------CATGTCGCAAAAGTACTTTAC- 18027 Query 259916 TCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTT 259974 ||| || |||| || ||||| || || ||||| || | || ||| ||||| || || Sbjct 18028 TCACGCCTCGCCAACCCTCTTCAACGCTGGCACTCCCCATCCTCAGCTCTCGTCCTGTTT 18087 Query 259975 TCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGC 260034 || | | |||||||| || |||||||| ||||| || ||||| |||||| || || Sbjct 18088 CCTTGTTGCCATGAAGGATGACTCGATCGATGGCATTTACGACACCCTCAAGACCTGTGC 18147 Query 260035 GCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGG 260094 | ||||||||| | ||||||||||| ||||| | ||| | || | | || Sbjct 18148 CATGATCTCCAAGACCGCCGGCGGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGG 18207 Query 260095 CGCCTACGTGGCGGGCACCAACG--GCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTT 260152 | | ||| | || |||||||||| | ||| |||||| | || ||||||||||| || Sbjct 18208 CTCGTACATTGCCGGCACCAACGGTGTCAG--CAACGGTATCGTTCCCATGCTTCGTGTC 18265 Query 260153 TTTAACGACACGGCGCGCTACGTCGACCAG 260182 || ||| |||| || || |||||||||||| Sbjct 18266 TTCAACAACACCGCCCGTTACGTCGACCAG 18295 >seq477 Length=12899 Score = 109 bits (120), Expect = 8e-18 Identities = 249/372 (67%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 332966 TCCATGGT-CGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAG 333024 |||||||| |||| | | |||||| || || || || || | | ||||| || ||||| Sbjct 11851 TCCATGGTTCGAC-GCAAGGCCTGCTGTGCTGCTGGTGTCATACTATCGGCTTCATCGAG 11793 Query 333025 GATGATGATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGAT 333084 |||| ||||||||| | || | || ||| ||| | ||| || || ||||| Sbjct 11792 AATGACGATCTTGTGCCTGCCTGGTGGGAGAGAGACCTTCTTCTGAGCAAAGTTCTTGAT 11733 Query 333085 GATCTTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTC 333144 | || || ||||| || || || |||||||| || |||||||| || ||||| | || Sbjct 11732 CTTGTTTCGGACGACATCGACACCTCGCTCGTCGGAGGCGTTGAGCTCAAGCACACCTTC 11673 Query 333145 GTCGGCGGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGT 333204 | | ||| |||| | || | || || || || || | |||||||| || | Sbjct 11672 CTTGTAGGCATCACCGAGAAGCGCACGTGCAAGACAGAGGACGGAAGTGGTCTTTCCGAT 11613 Query 333205 GCCGGGCGGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAG 333264 || ||| |||||| | | ||| | || |||||||||| | | | || || Sbjct 11612 ACCCGGCAGACCCGAAATGAGGAGATGCGGACAGTTGCCGTCGTTCTGAATCACTTTTAG 11553 Query 333265 GTAGGCAACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTC 333324 | ||| || || | ||||||||| | ||| ||||| || || ||||||||||| Sbjct 11552 TCGGTCAATGGTGTCTTTGTTGCCGACCACGTCATCGAGTCGCAACGGACGGTACTTTTC 11493 Query 333325 GATCCATGGGAG 333336 || |||||| || Sbjct 11492 GACCCATGGAAG 11481 >seq313 Length=22788 Score = 95.1 bits (104), Expect = 2e-13 Identities = 168/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| ||| |||||| || || |||||||| |||||| || | | ||| Sbjct 6104 TACTCCACCTACATCTACCGTGTCCTTAAGCAGGTTCACCCCGACACTGGT-----ATC- 6157 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||| | || | ||||| || || | || || |||| ||||||| | Sbjct 6158 TCCAACAAGGCCATGGCCATTCTTAACTCCTTCGTTCAGGATATCTTCGAGCGCATCGCC 6217 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || |||||| || || || ||||||| || ||| |||| |||||| Sbjct 6218 ACTGAGGCCTCCAAGCTCGCTTCCTACAACAAGAAGTCGACCATCTCTTCGCGAGAGATC 6277 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| || || ||||| ||| | | ||| || || ||| ||||||| ||||||| || Sbjct 6278 CAGACTGCTGTCCGCCTCATCCTCCCCGGTGAGCTTTCCAAGCACGCCATCTCCGAAGGT 6337 Query 725139 ACCA 725142 |||| Sbjct 6338 ACCA 6341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176308094556608