Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq957 122 8e-23 seq93 104 2e-17 seq17 98.7 9e-16 seq29 86.0 6e-12 >seq957 Length=1833 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 ||||||||||| ||||| |||||||| | || ||||| | || |||| ||| ||||| Sbjct 236 GTACTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATCCTCCAACTGTTTACCA 295 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 ||||| ||||| ||||||||||| | ||||| | ||||||||| ||||| ||| Sbjct 296 GCAAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGAATCTTGGCCTTG 355 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | |||||| ||||| || |||| ||||| || || || || | || Sbjct 356 ACATTGTCAATCGTGTCCGAAGATTCGACTTCCAAAGTGATGGTCTTTCCTGTGAGCGTC 415 Query 35720 TTCACAAATATCTGCAT 35736 || ||||| |||||||| Sbjct 416 TTGACAAAGATCTGCAT 432 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || || | || || | ||| ||||| |||||||| ||||||||||| | Sbjct 434 CCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAG 493 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| |||| || |||||||| || ||||| || | ||||||||||| | ||| Sbjct 494 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 553 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| ||| |||||| ||| | | | | | ||||| || || || Sbjct 554 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACT 613 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || || ||||| || || ||||| |||||||| Sbjct 614 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 660 >seq93 Length=51913 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | ||| || | || || |||||||| || ||||| Sbjct 49117 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAA 49058 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | |||| || ||||||||| |||||| ||| | | | Sbjct 49057 GATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 48998 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | ||||| || |||||||| | ||||| || Sbjct 48997 GTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAAC 48938 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 48937 AAAGATCTGCAT 48926 >seq17 Length=97802 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | ||| || | || || |||||||| || ||||| Sbjct 47646 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAA 47587 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | |||||| ||| ||| || || | | || Sbjct 47586 GATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCC-TGAATCTTGGCCTTAACGT 47528 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||||| ||||| | ||||| || || || |||||||| || | Sbjct 47527 TGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGA 47468 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 47467 CGAAGATTTGCAT 47455 >seq29 Length=82580 Score = 86.0 bits (94), Expect = 6e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || ||||||||||| || || Sbjct 52024 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 52083 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | |||||||||| |||||| ||| | || Sbjct 52084 GATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 52142 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | |||||| || |||||||| | ||||| || ||||| || Sbjct 52143 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGT 52191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450705785406720