Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq957 100 2e-16 seq17 100 2e-16 >seq957 Length=1833 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| |||| || | ||| ||||| || || ||||| || ||||| || Sbjct 434 CCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAG 493 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||||||||| || || || | || || ||||| || || || || Sbjct 494 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 553 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||||| || | | || | |||||| | || || ||| Sbjct 554 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACT 613 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | ||||| |||| || || |||||||| |||||| Sbjct 614 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATA 661 >seq17 Length=97802 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || || || ||||| ||||||||| | | | || | ||||| ||||| Sbjct 47658 ATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTG 47599 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || || || | || || ||||| || || || || | |||||| ||||| ||||| Sbjct 47598 CTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGAATCTT 47539 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | | || | ||||| | || ||| || || ||||| |||| ||||| || Sbjct 47538 GGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGT 47479 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 || ||| || || |||||||||||| Sbjct 47478 CAAAGTCTTGACGAAGATTTGCATA 47454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424853692209408