Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq97 224 1e-53 seq383 143 3e-29 seq539 116 5e-21 >seq97 Length=50192 Score = 224 bits (248), Expect = 1e-53 Identities = 902/1400 (64%), Gaps = 43/1400 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||||| || || || ||||| || ||||||||| || || || Sbjct 19309 GTAGATGTTGGAGGTGTAGGGCTCGAAACATTCGTTGAAACCCAAGATCTGACTTGTAGA 19250 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || || | ||| || ||| || ||||| | || ||| | Sbjct 19249 TGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGGAGACCGTGCTTGGCGATCTTGGC 19190 Query 110827 CTTGAGAACATCCCAGTCGTA--GTTGAGCTTG-GTTTCACCTTCCCACATGTCAAACTG 110883 |||||| | ||||||| | | | | | || |||| ||||||||| |||| Sbjct 19189 CTTGAGGCTAGCCCAGTCCCAAAGATCGGAAGGAGTGACACC---CCACATGTCGTACTG 19133 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 || | || ||||| || ||||| || | |||| || |||| || || ||| ||| Sbjct 19132 GAGTTCACCCTGGGAAGCAGGAGAGCCGGCGTAGGTCTCGTAGGTGCCGTGCTCTTGAGC 19073 Query 110944 CAATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||| || || | |||| || || | || || || ||||| || ||||| | | |||| Sbjct 19072 CAACTCGCACGATCGC-TCAAGAGCGGCATGGTAGATGGTCTCGAAGATCTGGACGTTCA 19014 Query 111003 TCTCCTTG-GCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 111061 || | || || || || || ||||| | | || || |||| || ||| Sbjct 19013 A-TCGACGAGCCTCGGGCGATTCGAAGGCGTAACCCATGATCATGAAGGCATCGGCAAGA 18955 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG 111121 || |||||||| | ||| ||||| | ||| ||||| ||||| || || |||||| Sbjct 18954 CCCTGAACACCGATACCGATAGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAACA 18895 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 || || | || |||| |||| ||| | || ||| | | ||| | | || Sbjct 18894 GGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATAGCCTTGGCAACCTCG 18835 Query 111182 TGAAG----TTTT--TCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 || | || | || || | ||| || || ||| | | ||||| Sbjct 18834 TGCAAACGCTTGTAGTCGTAGACCTTGGTGACAGGGTCGA---TGA---AGGTGGGAAGA 18781 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || || | ||||||||||| |||||| | | ||||||| | || || Sbjct 18780 GCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCA 18721 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || |||||||| | ||| || || || | ||||| ||||| ||| |||| Sbjct 18720 GTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCA 18661 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || ||||||||||| ||| |||| | || ||||| ||||| || | ||| || || | | Sbjct 18660 GCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTAC 18601 Query 111416 CA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 || | | || | | || | || || |||| || || || |||||||| ||| Sbjct 18600 CAGAGCTTCTGAGCCTTG-ACGGTGCGCTTGGAACGACCTTCAGCCTCGTAACGCTCGTA 18542 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534 ||| |||||||||||||| ||| | |||||| || || || || || | Sbjct 18541 GAGACGCTCAAACTCCTCACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGGGCACAT 18482 Query 111535 AAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 111594 || ||||||| || | |||||||| ||||||||| || || |||| ||| || | Sbjct 18481 GAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGC 18422 Query 111595 TGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAA 111654 | ||||| || | ||| | ||||| | ||| ||||| || || || ||||| Sbjct 18421 GTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAA 18362 Query 111655 CTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC-- 111712 ||| | || ||||| |||||| ||||||| |||| || | | || ||||| Sbjct 18361 CTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACC---GGGACGCTT 18305 Query 111713 ----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 ||| | || | || || || || ||| ||| || || |||||||| |||| || Sbjct 18304 GTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGAT 18245 Query 111769 ACCAT--CTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCAT 111824 ||| | |||| ||| || || || || |||||| | | ||| | | Sbjct 18244 ACCGTTGCTGA--CACCGTTGGTGCCGGCAATGTACGAG--CCAGTACCTCGAATGCAGT 18189 Query 111825 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 111884 | |||| || ||||| || || || ||| ||||| ||||| | | || || Sbjct 18188 GAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGT 18129 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 | || || || | ||| ||||| ||||| |||| | |||||| || || | ||| | Sbjct 18128 CGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGAG 18069 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGAC 112003 | || || ||||| |||||||||||||| | |||||| | || ||| ||| ||| Sbjct 18068 GATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGT-AAAGTACTTTTGCGAC 18010 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || || ||| ||||| | || || ||||| | ||||| || || | ||||| Sbjct 18009 ATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACAGCGACA 17950 Query 112064 CGCATGAACATGTACTGTGG 112083 ||||||| ||||| ||| || Sbjct 17949 CGCATGAGCATGTGCTGGGG 17930 >seq383 Length=18078 Score = 143 bits (158), Expect = 3e-29 Identities = 283/411 (69%), Gaps = 16/411 (4%) Strand=Plus/Plus Query 182491 AGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCGGCAT 182550 |||||| || || | || | ||||||||||||||| || |||||||| | ||| || Sbjct 15626 AGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGCGAACCATCGTGATCCTGAT 15685 Query 182551 CTGTCATAATCATAAGACGACCATAGCG-AAGTTCAGAAACATCTTGGTAGTCTTTTCCT 182609 | ||||| ||||| | || || || || ||| | ||| || | || | ||| || Sbjct 15686 CGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTAACGTCGAGATATTGTTTGCCG 15744 Query 182610 TGTTGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGGT--TTGATGTAAGCTGTG 182667 ||||| ||||| || |||| ||||| | |||| ||| || || ||| | ||| Sbjct 15745 TGTTGCAGACCGAGAATCTCCTTGATGGCTTTGATCTCTGCGTTCTTCATG--ATCTGAT 15802 Query 182668 CCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGTGAT 182727 | | ||| || ||||| || | |||||||| || ||||| |||||||||| | Sbjct 15803 CGTGAGTAGCCTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGAAGACACCGTAGTTGT 15862 Query 182728 CACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTGA 182787 ||||||| || || ||||| ||||| ||||| | || || || ||||| || |||| Sbjct 15863 CACGACCCACTTCAACAAGACCGGCAACAGCGAGAGCCTTGGCTGAGTCACCTTCGGTGA 15922 Query 182788 CAATGAGAGTACACTTTCCAGATT--GTGCCGTACCCGCCTTGTTCGCGTCATCCAACTT 182845 |||||| ||||| | || || |||| ||| || ||||| || || || | ||| Sbjct 15923 GAATGAGTGTACAGTCCTTAGCTTTCCTGCC--ACCTGCATTGTTGGCATCTTCGAGCTT 15980 Query 182846 GGGAATACCGGTAATTTTGG---ACTTGCGAGCACCATCGGTCTTCTTGAG 182893 ||| || ||| || ||| |||| | ||| |||||||||||||| Sbjct 15981 GGGGATGTTGGTGATCCTGGTACGCTTGTG---ACCGTCGGTCTTCTTGAG 16028 >seq539 Length=9559 Score = 116 bits (128), Expect = 5e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| |||||||| || ||||| || || || || |||||| ||||| ||||||||||| Sbjct 6073 GTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 6014 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | |||| | ||| || |||||||||||||||||||| || Sbjct 6013 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGC 5954 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 |||||| |||| || || || || |||| Sbjct 5953 CGCAAAGGCAACGAGACGCTCTGCAAAGG 5925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627909659366400