Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq97 237 2e-57 seq383 152 6e-32 seq539 129 7e-25 >seq97 Length=50192 Score = 237 bits (262), Expect = 2e-57 Identities = 576/862 (67%), Gaps = 13/862 (2%) Strand=Plus/Minus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 ||||| ||||| || || || || || |||| |||||| | || ||||||| || Sbjct 18786 GGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATG 18727 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||||||||| || | ||| || || || | |||||| || || ||||| | Sbjct 18726 ATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGG 18667 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || |||||||| || ||| | || | || ||||| || || |||| ||| || Sbjct 18666 TTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGATG 18607 Query 118884 GCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTT 118942 || | ||||| | || | ||| || ||| |||| || || || ||||||| Sbjct 18606 GCGTACCAGAGCTTCTG-AGCCTTGACGGTGCGCTTGGAACGACCTTCAGCCTCGTAACG 18548 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 |||||| |||||||| ||||| | || | ||| || || || | || Sbjct 18547 CTCGTAGAGACGCTCAAACTCCTCACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGG 18488 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 ||| | ||| ||||||| || || |||||||| |||||||||||| || || | ||| Sbjct 18487 GCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCA 18428 Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122 ||| || ||||||| || || ||| ||||||| | || || || ||||| || Sbjct 18427 GAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTC 18368 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 | || || | || ||||| |||||| || || | ||| | || | | || ||| Sbjct 18367 GAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACG 18308 Query 119183 ---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 |||| |||||| || || | || ||| ||| || ||||||||||| |||| Sbjct 18307 CTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAAC 18248 Query 119240 GATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCG 119297 |||||| | | || || || || || |||||| | | | ||| | | Sbjct 18247 GATACCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC--AGTACCTCGAATGCAG 18190 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 || |||| || |||||| || || || ||| ||||| || || | |||| || Sbjct 18189 TGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTG 18130 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 |||| || ||||||||||||||| |||| | || | ||||| ||| ||| | ||| Sbjct 18129 TCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGA 18070 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGA 119476 || ||| || |||||||||||||| ||||| | |||| || || ||| ||| || Sbjct 18069 GGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGT-GAGTAAAGTACTTTTGCGA 18011 Query 119477 CATCTTGTCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 119535 ||| || ||| ||||| | || | | ||||| | ||||||||||| | | || Sbjct 18010 CATGAGGTTGTAAGTCTCGATAGCACTCTCG-ATGTCCTGGCCGTGAATACCAACAGCGA 17952 Query 119536 CCCGCATAAACATGTATTGGGG 119557 | ||||| | ||||| ||||| Sbjct 17951 CACGCATGAGCATGTGCTGGGG 17930 >seq383 Length=18078 Score = 152 bits (168), Expect = 6e-32 Identities = 265/380 (70%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 179733 CTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 179792 |||||| |||||||| |||||| || || | |||| |||||||||||| || || || Sbjct 15609 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGCGA 15668 Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 179851 |||||||| |||| ||| ||||| ||||| | | || || || ||||| | ||| | Sbjct 15669 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTAACGT 15727 Query 179852 CTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 179911 | |||| | || || ||||| ||||| | |||| ||||| | |||| |||| || Sbjct 15728 CGAGATATTGTTTGCCGTGTTGCAGACCGAGAATCTCCTTGATGGCTTTGATCTCTGCGT 15787 Query 179912 TTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGA 179971 | ||| || | | ||| || || || || | ||| || ||||| |||| Sbjct 15788 TCTTCATGATCTGATCGTGAGTAGCCTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGA 15847 Query 179972 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 180031 | |||||||||| |||||||| || || ||||| ||||| ||||| | ||| || | Sbjct 15848 AGACACCGTAGTTGTCACGACCCACTTCAACAAGACCGGCAACAGCGAGAGCCTTGGCTG 15907 Query 180032 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCTGCCTTGTTC 180090 | ||||| || || | ||||| ||||| | || || | | | | ||||| ||||| Sbjct 15908 AGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTT-TCCTGCCACCTGCATTGTTG 15966 Query 180091 GCGTCGTCCAACTTGGGAAT 180110 || || || | |||||| || Sbjct 15967 GCATCTTCGAGCTTGGGGAT 15986 >seq539 Length=9559 Score = 129 bits (142), Expect = 7e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||||||||| ||||||||||| || || |||||| ||||| ||||||||||| Sbjct 6073 GTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 6014 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | || || || ||||||||||| ||||| || Sbjct 6013 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGC 5954 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||| || |||| ||||||||| ||||||| Sbjct 5953 CGCAAAGGCAACGAGACGCTCTGCAAAGG 5925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618314728823040